Coregonus clupeaformis (lake whitefish): 123485938
Help
Entry
123485938 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-9-like
KO
K16498
protocadherin delta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
123485938
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
123485938
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
123485938
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123485938
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
123485938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
MAP17
7tm_3
DUF6377
V_ATPase_I
EphA2_TM
Big_9
Motif
Other DBs
NCBI-GeneID:
123485938
NCBI-ProteinID:
XP_045072992
LinkDB
All DBs
Position
Unknown
AA seq
1054 aa
AA seq
DB search
MDLTDCYLLAALVACFWIDPSIAQELIYPIREELQENVLIGNIPKDLNISHTNAATGASA
NLVYRLVSKAGDNPLLRVQSSTGEIFTTSNRIDRERLCPGPSFEESECSFEIEVVILPND
YFRLIKIKIVVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHRYQL
VNGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKVKVEDGGAPQKSSTAILQVT
VTDVNDNKPVFKESQIEVHIPENSPIGTSVVRLQATDADVGANAEIKFMLGTQVSPATKR
LFALNGTTGLITVQRPLDREETAVHKLSVLASDGSSSPARATITINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDKDTDVNGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDFEGTKEYNFKIIASDSGKPSLNQTALVRVRLEDENDNPPIFSQPVIELAVMEN
NKRDLFLTMLSATDEDSGKNAEIVYQLGPNASFFDLDRXTGVLTASRVFDREDQDRFLFT
VTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVTLSILSDNENFILDPYSGVIKSNVSFDREHQSSYTFDVRAVDSGRPPSSSAAKV
TINVIDVNDNIPIVIYPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
NKGLFXIDPVTGNITLEEKPAISDIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNA
TFIYDLIRRTMETPLDRNIGESSETYQSGDYLTIMIAIVAGAMVVIVVIFVTVLVRCRHT
SRFKAAQRKKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEENKPDDDQAHEPI
NGTISLPAELEEQGMGHFDWNAAPPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSAK
KHHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPIHPSRQGTLTGT
LTRARTELNPEYLDLRLQGRAQPRILDPMHTPGG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggatctaacagactgttacctgttggccgcgcttgttgcctgcttttggatagaccct
tctatagcccaggagctgatctaccccatcagagaggagctgcaggagaacgttctcatt
ggaaacataccaaaggacctgaacatctcccatacgaacgccgctaccggagccagcgct
aacctggtctacaggctggtttctaaagctggggacaaccctctgctcagggtgcagagc
agcacgggagagatatttacaacctctaaccgcattgacagggagaggctctgtcccggc
ccctcgttcgaggagagcgagtgctccttcgagatcgaggtggtgattttacccaacgac
tacttcagactgatcaagattaagatcgtggtcaaggacaccaacgacaacgctcccatg
ttcccgtctcccgtcatcaacatctccatcccggagaacacgctgatcaacagccgtttc
gccatcccttccgccaccgaccccgacaccggccccaacagcgtccacaggtaccagctg
gtgaacgggcaaagcgccttcgggttggacatcgtggagacgccggaaggggagaagtgg
ccgcagctcatcgttcagcagaacctggacagggagcagaaggacacgtacgtcatgaag
gtcaaggtggaggacggcggcgcgccgcagaaatccagcaccgccatcctccaagtcacc
gtcacggacgttaacgataacaaaccggtgttcaaggagagccagatcgaggtccacata
ccggagaactcgcctatagggacgtccgtggttcggctacaggctacggacgcagacgtc
ggggcgaatgcagaaatcaaattcatgttggggacgcaggtgtccccagctaccaagaga
ctgtttgctttgaacggcaccactggccttataaccgtacagcggcccctcgacagagag
gagaccgccgtacacaagttatctgtgttagcgagcgacggcagctccagccctgccaga
gctaccataactataaacgtgaccgacgtgaacgacaatccaccgaacattgatctgaga
tatatcatcagtcccatcaacggcactgtgttcctctcagagaaagacccaatcaacacc
aagatagctctgatcactgtgtcggacaaggacacggatgtcaatggcaaagtcatctgt
ttcattgagaaggacgtcccctttcacctcaaagcggtgtacgacaaccagtacctactg
gagacatcggcgctgctcgacttcgaggggaccaaagagtacaacttcaaaatcatagcc
tctgactcgggcaagccgagcttgaaccagacagcgttggtgagggtgaggctggaggac
gaaaatgacaacccgccgatcttcagccagcccgtcatcgagctggccgtcatggagaac
aacaaacgtgatctcttcctcacgatgctcagcgccaccgatgaggacagcggaaaaaac
gcggagatcgtctaccagctgggccctaacgcctcgttcttcgacctggaccgtnaaacc
ggtgtcctcacggcctcccgggtgttcgatcgtgaggaccaagatcggttcctcttcacg
gtaacggctcgggacaacgggactcctccgctccagagccaggcggcagtcatcgtgaca
gtactcgacgagaacgacaacagccccaagttcacccacaaccacttccagttctttgtg
tcagagaacctgcccaagtacagcacggtgggggtgataaccgtcacagactcagacgcc
ggggaaaatgcagccgtcacgctgtcaatactcagcgacaacgagaactttatcctggac
ccgtactctggagttataaagtccaacgtgtccttcgaccgggaacatcagagctcctac
acctttgacgttcgggcggtggatagcgggcggccgccaagttcctcggccgccaaggtg
accatcaatgtcatcgacgtaaacgacaacatccccatcgtcatctaccccccctccaac
acctccttcaaactggtcccgctctcgtccatccctgggtcagtggtggctgaggtcttc
gctgtggacggtgacacggggatgaacgcagagctcaagtacaccatcgtgagcggcaac
aacaaaggtctgttcnggatcgaccctgtgacaggaaatatcaccctggaggagaagcct
gctatctccgacatcggcctccaccggctggtcgtgaacattagcgacctgggctacccc
aagtccctgcacaccctagtgctggtgttcctctacgtgaacgacacggtcggcaatgcc
acgtttatctacgacctcatccgccgcaccatggagacccccctggacaggaacatcggg
gagagcagtgagacctaccagagcggagactatcttaccatcatgatcgccatcgtagcc
ggggcgatggtggtgattgtggtgatcttcgtgacggtcctggtgcgctgccgccacacc
tcgcggtttaaggcggcccagagaaagaagcagggcgccgagtggatgtctcccaaccag
gagaacaagcagaacaagaagaagaagcgtaagaaaagaaagtcgcccaaaagctccctc
ctgaactttgtcaccatcgaggagaacaagccggacgacgaccaggctcacgagcccatc
aacggcaccatcagcctgcccgccgagctagaggagcagggcatgggccactttgactgg
aacgctgctcctcccaccaccaccttcaagccctccagtccggacctggcccggcactac
aagtccgcttctccgcagtccgcgttccacctcaaagcagacacgccggtctccgcgaag
aagcaccacgtgattcaggagctcccgctggacaacaccttcgtagggggctgtgatact
ctctccaagagatcctccactagctcagaccacttcagtgcctcggagtgcagttcccag
ggaggattcaagactaagggacccatacacccatccagacagggaacgctaacaggaacg
ttaacccgcgcccgaaccgaactgaaccctgaatacctggacctccggctccagggccga
gctcaacccagaatactggaccccatgcacacccctggaggttag
DBGET
integrated database retrieval system
