Coregonus clupeaformis (lake whitefish): 123487043
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Entry
123487043 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
cclu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123487043
09124 Replication and repair
03420 Nucleotide excision repair
123487043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
123487043
03400 DNA repair and recombination proteins [BR:
cclu03400
]
123487043
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
123487043
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123487043
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123487043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
123487043
NCBI-ProteinID:
XP_045074129
LinkDB
All DBs
Position
Unknown
AA seq
785 aa
AA seq
DB search
MGKKDRGDRERKSSKKRVYDEDEDEEEAMGSESQEAVPAAAGKTVDESAIKLDEYGAKDY
RLQMLLKNDHGSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPVHVHEYKLTAY
SLYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAF
PEVIQRLLQDSVIRDCRLRTAEGTDTELITEVIHSKSAISKSLQDNGAAASTSAAPEGQT
PGAAQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCINMEYPLLAEYDFR
NDTVNPDINMDLKATAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVR
KRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTK
RSWEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIV
DLNFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKRRILLYTMNP
NKFRACQFLIKFHERRNDKIMVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKH
NPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAY
FYSLVSQDTQEMAYGTKRQRFLVDQGYSFKVITKMAGMEEDNLMFSSREEQYQLLQKVLA
ATDLXREEEVVIGENGPANGIFQRRPGTMGSMSGADDSVTWSIVLGAGPTWEQHPPALQR
FQEGP
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaagacaggggagatcgggagaggaagtcttctaagaagcgtgtgtatgat
gaagatgaggatgaagaggaggcgatgggcagtgagtcccaggaggccgtccctgcagcg
gctggtaaaacagtggatgagtcggccatcaagctggacgagtacggggctaaagactac
cggctgcagatgttgctgaagaacgaccacggatcacgacctctctgggtggccccagat
ggacacatcttcctggaagccttctcaccggtgtataaatatgcccaggacttcctggta
gccatagcagagccggtgtgtcgtccggttcacgttcacgagtacaagctgacagcctac
tccctgtatgctgccgtgagcgtgggtctgcagacctcagacatagtggagtatctccag
aaactcagcaagacatctgtaccggacggcatcgtgcagttcatcaagctctgcactgtg
agctatggcaaggtcaagttggttctgaaacacaacaggtactttgtggagagtgccttc
cccgaggtgatccagcgtctgcttcaggacagtgtgatcagagactgtcgtctccgcacc
gcagagggaactgatactgagctcatcacggaggtcatacacagcaagtcagcgatctct
aagtccctccaggacaacggagcagcggcctccacctcagcggcccctgagggccagact
ccaggagccgcccaggtaccagaggacatattcagctactacgaacagatggacaaggag
gaagaggaggaggaggagacgcagaccgtgtcctttgagatccgacaggagatgattgaa
gagctgcagaagaggtgtatcaacatggagtatcctctcctggctgagtatgacttccgg
aacgacacggtgaaccctgacatcaacatggacctgaaggccacagctgtgctcaggcct
taccaggagaagagcctccgcaagatgtttggtaacggccgagcccgctcaggagtcatc
gtactaccctgtggtgcggggaagtctctagtaggggtaaccgcagcctgtacagtccgt
aagcgctgcctggtcctggggaacagctctgtgtcagtagaacagtggaaggctcagttt
aagatgtggtccaccatcgatgactctcagatctgccgcttcacctcagacgccaaagac
aagccgatcggctgctcggtggccatcagcacttacagcatgttgggacacaccaccaag
aggtcttgggaggcagagagggtcatggagtggatgaggtcccaggagtggggactcatc
atcctggacgaggtgcacaccatccctgccaagatgttccggcgtgttctgaccattgtc
caggcccactgtaagctgggtctgaccgccacactggtccgagaggacgacaagatcgtt
gatctcaacttcctgatcgggcccaagctgttcgaggctaactggatggagctacagaac
aacggatacatcgctaaggtccagtgtgccgaggtgtggtgtccgatgtctccagagttc
taccgggagtacgtggcgatcaagactaagagacgtatcctgctctacaccatgaacccc
aacaagttcagagcctgtcagttcctcatcaagttccacgagagacggaacgacaagatc
atggtgttcgctgacaacgtcttcgctctgaaggagtacgccatccgcctcaacaagccc
tatatctatggccccacctctcagggagagagaatgcagatcctgcagaacttcaaacac
aaccccaagatcaacaccatcttcatctccaaggtgggtgacacatcctttgacctgcca
gaggctaatgttctaatccagatctcctctcacgggggatctcgcagacaggaggctcag
aggcttggcagggtactgcgagccaagaaaggtatggtagcggaggagtacaatgcctac
ttctactcgttggtgtcacaagatacccaggagatggcctacggcaccaagagacaaagg
ttcctggtggaccagggctacagcttcaaggtgatcactaaaatggcagggatggaggag
gataatctgatgttctcctccagagaggagcagtatcagctccttcagaaggttctggct
gccacggacctcnggcgagaggaggaggtggtcatcggagagaatggaccggccaatggt
atcttccagcggaggcctggtaccatgggctccatgtctggggctgatgactccgtcaca
tggagtatcgttctaggggcagggcccacatgggaacaacacccacccgctcttcagcgc
ttccaggagggcccatag
DBGET
integrated database retrieval system
