Coregonus clupeaformis (lake whitefish): 123488959
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Entry
123488959 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
123488959
03009 Ribosome biogenesis [BR:
cclu03009
]
123488959
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123488959
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123488959
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
Helicases
123488959
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
123488959
NCBI-ProteinID:
XP_045075627
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MASIRNSLASSTPLLVKCANCWGSSRASATDDQLLQGLHHKRGLDIKSQEAALRMGPDVL
IATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTMLFSA
TMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPAREGDREAIVAALLTRTFQ
DHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVSQTLR
LEVWISTSQDAVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKDIVRKAK
TPVKARVLPQEVILKFRDLIEKLEKDVYAVMRLEREERAMSHSEAQISVAQKRLAQNADE
TDPQRMWFQTHDERKKDRMTKALADFDLALRGKKKREKFIKEGKKKELSSEDRAQFEILK
SQMYAERAAKKDRKPKRARAMPEDEAVQKGAKQKAGKPAKKSVFDKELTNTSKKALKQYR
AG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccattaggaacagcttggcgtcgtccacacctctcttggtgaagtgcgcgaac
tgttggggatccagcagagcgtctgccacagacgaccagcttctccagggccttcatcac
aagaggggtctggacatcaaatcccaggaggcggcattgcggatgggacctgacgtcctg
atcgccacgccaggtcgactgattgaccacctgcacaacacgccctcctttgagctcagc
cagattgagatcctcatcttggacgaggccgaccggatgctggacgagtactttgaagag
cagatgaaggagatcatcaggatgtgtgcctaccagagacagaccatgcttttctctgcc
accatgagcgaggaggtaaaagacttggcgtcggtctctctgaagcagccggttcgtatc
tttgtgaacagtaacacagacgtggcaccctaccttagacaggagtttgtcaggatccga
ccggccagggaaggagacagggaggctattgtggcagccctgctgacgcggacgttccag
gaccacgtgatgctgttcacccagaccaagaagcaggcccaccggatgcacatcctcctg
ggcctgatggggctgaaggtgggagagctgcacggaaacctgtcccagacccagagactg
gagagcctcaggcggttcaaagatgaacagattgacatccttgtatcacagacgttgcgg
ctagaggtctggatatcgacgagtcaagacgcggtgattaacttcaccatgcccaacaca
gtgaagcactacgttcacagggtgggccgcacggcccgtgccggcaaggtgggtcgctct
gtgtccctggtgggcgagactgagaggaagatgctaaaggacatcgtcaggaaggccaag
acccccgtgaaggcccgcgtcctgccacaagaggtgattctgaagttcagagacctgatt
gagaagctggagaaggacgtgtacgccgtgatgcgcctggagagagaggagagggccatg
tctcactcagaggctcagatcagcgtggcgcagaagcggctggcacagaacgcagacgag
acggatccccagaggatgtggttccaaacgcacgacgagcgcaaaaaagaccgcatgacc
aaagctctggccgactttgacttggccctgagaggaaagaagaagagggagaagttcatc
aaggaggggaaaaagaaagagttgtcgtccgaggacagagcccagtttgagatcctcaag
tcccagatgtacgctgagcgagcagccaagaaggaccggaaacccaaacgagccagggcc
atgccagaggacgaggccgtccagaaaggagcgaaacagaaagctggtaaaccagccaag
aagtctgtatttgacaaagaacttacaaacaccagtaagaaagcactcaagcagtacaga
gctgggtaa
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integrated database retrieval system
