Coregonus clupeaformis (lake whitefish): 123490752
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Entry
123490752 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
123490752
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
123490752
04091 Lectins [BR:
cclu04091
]
123490752
Proteoglycans [BR:
cclu00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
123490752
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
123490752
Lectins [BR:
cclu04091
]
C-Type lectins
Lecticans
123490752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
hEGF
ig
I-set
Motif
Other DBs
NCBI-GeneID:
123490752
NCBI-ProteinID:
XP_045076566
LinkDB
All DBs
Position
Unknown
AA seq
1432 aa
AA seq
DB search
DHTVHDPGAPTIATLSHRIKWSRITKEHVSVILVAMDGEVKVEEDYLDRVHMVGYPQTPT
DASIKITELRSNDTGTYRCEVQHGIEDNHDTVDVLVQGIVFHYRAITTRYTLTFEKAKAA
CIQNSAVIATPEQLQAAYDDGFHQCDAGWLSDQTVRYPIHDPRENCYGDKDEFPGVRTYG
VRDVNETYDVYCFAEKMTGSVFYSGSVAKFTYSEAEEQCSKQGALLATTGQLYLAWQAGL
DVCNAGWLGDRSVRYPINIPRPQCGGGLLGVRTVYLHVNQTGYPXPESRYDAYCYTETDE
DGSGMVVPTKAGSGVLSVATVTQGPPEVFFRKTATESEALGDVLATQKPTSVDFTFGTEL
PLPQPPSVTELPFPQPPSVTELPLPQPPSVTELLLPQPPSVTELPLPQLPSVTELPLPQP
PNVTELPLPQPPSVTELVVDVVGRVTARPDVGSEISKVSGSGYLFSATGVVFHYRAGSSR
YAFTFEEAQLACQSVGASIATPEQLQAAYEAGYHQCDAGWLLDQTVRYPIVSPREKCSGD
LETLPGVRSYGLRPADEHYDVYCYVDRLRGDVFHAGSSEGFTYDGALAHCQELNATLAST
GQLYAAWRQGLDKCRAGWLIDXSVRYPITNPRAACGAGKAGVYTVFTHNNQXGIPRPVLR
YDAYCFKVDILLLANETGLNITEIEEALVNLTSITDLLRPVLPSITAPISVESSGSGSGS
GASGASGSSGDLSGDHSGELPYSGDLSGSGDLSGSGSAEIPSGSSGLSSGDASGSGLSGD
GSGITVIFSSGSGSVLSGSGSGGSSGGWRGKHWDPHLPHTNGIGNGIGNGQWQCVPVGIG
KWIRCHSSSSEKFSGFPSGFFPSGGSSGHSGEESGSRDTQVLLIHGKLVEVSTSHTHTEQ
ELGGGGLEFSGSGSGSSGSGFFPGVTFLGSGFTDLTGSASGEQEGLLTSRGQPQGNRRPR
GLSTTAPGNGDISGSASGSSGSGFFQGVTFLGSGFTDLTGSASGEQEASGSLHYGSGSGD
ISSSASGSSGSGFFPGFTDLTGSASGEQEASGSLHYGYGAGRGGYASGFGTSGFPSGDMS
EISRSSTSGEEDSAVTFLTSDLMTEVSKVTTVSMELGAGPVEINGQGSGFHSGAAPTTQP
RPAVSHLGHTLEICSLWCCPLPSDRELMADTEGPEEALAGGAELEEITGEFYVTFAPNLA
PTGLAATTAPAISLQTPAVMEEPSSEEGMPNPCDPNPCGAGSCSVEDGDGLCQCPPGKVG
DGCQYEVDVCHSNPCANGATCVENADSYKCLCLPSYGGDCCEIDEQECEEGWTKFQGNCY
LHFPERETWLDAEQRCRDLSAHLVSIITPEEQHFVNSNGQDYQWIGLNDKTVENDFRWID
GTPLQFENWRPNQPDNYFNSGEDCVVMIWHENGQWNDVPCNYHLPFTCKTGP
NT seq
4297 nt
NT seq
+upstream
nt +downstream
nt
gaccacaccgtccacgaccccggcgcccccaccattgccaccctgtcccaccgcatcaaa
tggagccgcatcaccaaggagcatgtctctgtcatcctggtggccatggacggagaggtc
aaggtggaggaggactatctggatcgggtccacatggtgggctatccccagacccccact
gacgccagcatcaagatcacagagttgaggtccaacgacactggcacctaccgatgtgag
gtacagcacggcatcgaggacaaccatgacactgtggacgtcctggttcaaggtattgtg
ttccactaccgggccatcacgacacgctacactctgacctttgagaaggccaaggcagcc
tgtatccagaacagtgctgtgatcgcgaccccagagcagctgcaggcagcgtacgatgac
ggcttccaccagtgtgacgccggctggctctccgatcagactgtcaggtacccaatccat
gatccacgtgagaattgctacggcgacaaagacgagttccccggggtgcgaacctacgga
gtgagagacgtcaacgagacttacgacgtgtactgttttgccgagaagatgacaggcagt
gtgttctactctggctctgtggctaagttcacctactccgaggctgaggaacagtgcagt
aagcagggggccctgttggccaccacaggacagctgtacctggcctggcaggctggtctg
gatgtgtgcaatgcaggctggctgggggacaggagcgtccgctaccccatcaacatccca
aggccgcagtgcggagggggtctgctgggggtacggaccgtgtacctccacgtcaaccag
acggggtacccanctcccgaatcccgctacgatgcctactgctacacagaaacggacgag
gacggctcgggcatggtggtgcccaccaaggcgggcagcggcgtgctgagcgtcgccaca
gtgacccagggtcctcccgaggtgttcttcaggaagacggccacggagagcgaggcgttg
ggcgatgtcctggccacccagaaacccaccagcgtggacttcaccttcgggactgagctg
cccctgccacagccacccagtgtcacagagcttccgttcccacagccgcccagtgtcacc
gagctgcccctgccacagccgcccagtgtcaccgagctgctcctgccacagccgcccagt
gtcaccgagctgcccctgccacagctgcccagtgtcaccgagctgcccctgccacagccg
cccaatgtcaccgagctgcccctgccacagccgcccagtgtgacagagttggttgtggat
gttgtggggagagtaacggccaggccagatgtggggagtgagatcagcaaagtgagcgga
tcaggatatttattttctgctacaggtgttgtgttccactaccgtgctggctctagccgc
tacgccttcaccttcgaggaggcccagctggcctgtcagagtgttggagcctccatcgcc
accccagagcagctccaggctgcctatgaggccggctaccaccagtgtgatgcaggctgg
cttctggatcagaccgtcaggtatccaatcgtgtctcctcgggaaaagtgctctggggat
ctggagactttaccaggagtgaggtcctatggactgaggcccgctgatgaacactacgat
gtgtactgctacgtggacagactcaggggcgatgtgttccatgctggctccagtgagggc
tttacctacgacggtgctctggctcactgtcaggagctgaacgctaccctggcctctact
ggacagctctacgccgcctggagacaagggttggataagtgccgcgcaggctggctaatc
gacncgagcgtccgctaccccatcaccaacccccgggcggcgtgtggtgcagggaaggca
ggggtgtacacagtattcacgcacaacaaccagnacggaatacccagacctgtactcaga
tatgacgcctactgcttcaaagtggacatcttgcttctcgccaatgaaactggattgaac
atcacagagatagaagaggctttggttaacctcacatccatcactgatttgctgaggcct
gtcctgccttccatcactgctcccatctctgtggagtcctcaggctctggttctggttcc
ggggcctctggggccagtggatcatccggagatctctctggtgatcactccggtgaactg
ccttattccggggatctgtccgggtcaggtgatctttcaggcagcgggagcgccgagatt
cccagtggatcgtctggcctgagtagtggagatgcgtccggctcggggctgagtggagac
ggatcgggaataacggtcatcttctcttcagggagcggcagtgttttatccggttcgggc
tctggggggtcctcaggaggctggagagggaagcattgggatcctcaccttccccacacg
aatgggatcgggaatgggattgggaatggtcagtggcagtgcgttcctgtcgggatcggg
aagtggatccggtgtcactctagttccagtgagaagttttccggatttccctcaggattc
tttccctcaggaggctccagtggtcattcgggagaggagtcgggaagcagagacactcag
gtcctgctgatccatgggaagctggtggaggtttccacctctcacacacacacagagcag
gagcttggtggagggggcctggagttcagcggctccggatcgggcagcagtggctcaggg
ttcttcccgggtgtgactttcttggggtcagggtttactgacctcacagggtcagcctca
ggagaacaggagggtttactgacctcacggggtcagcctcaggggaacaggaggcctcgg
ggtctctccactacggctccgggaaacggtgatatcagcggttcagcctcgggcagcagt
ggctcagggttcttccagggtgtgaccttcttggggtcagggtttaccgacctcacgggg
tcagcctcaggggaacaggaggcctctgggtctctccactacggctccggaagcggtgat
atcagcagttcggcctcgggcagcagtggttctgggttcttcccggggttcaccgacctt
acagggtcagcctcaggggaacaggaggcctcagggtctctccactatggatacggagcg
ggaagaggtggatacgcatcagggttcggaacgtcgggcttcccatccggggacatgtct
gaaatctccagatcctccaccagcggtgaggaggacagcgctgtcaccttcctgactagt
gacttaatgacagaggtttccaaggtgaccacggtttccatggagctgggggctgggcca
gtggagatcaacgggcagggaagcgggttccactcaggagcggctccgaccacccaaccc
aggccagcggtgtctcatctggggcacactctggagatctgctctctgtggtgctgtcct
ctgcccagtgacagggagcttatggcggacacagaggggccagaggaggccctggctggg
ggggctgagctggaggagatcaccggcgagttttacgtgacctttgcccccaaccttgct
cccaccggattggctgccaccacggccccggccatctccctgcagacccctgccgtcatg
gaggagccgtcctcagaggagggtatgcctaacccctgtgaccctaacccgtgtggtgct
gggtcatgctcagtggaggatggcgatgggctgtgccagtgtccacccgggaaagtggga
gatgggtgccagtatgaggttgatgtgtgccattccaacccttgtgccaatggagccacc
tgtgtggaaaatgcagactcttacaaatgcttatgcctgcccagctacggaggggactgc
tgcgagattgacgagcaggagtgtgaggagggctggactaagtttcaaggcaactgttac
ctgcacttccccgagagagagacctggctggacgccgagcagcgctgccgagacctcagc
gctcacctggtcagcatcatcaccccagaggaacagcactttgtcaactccaacggccag
gactaccagtggattgggctcaatgacaagacagtggagaatgacttccgctggatagac
ggcacaccactgcaatttgagaactggcggccaaaccagccggataactactttaactct
ggagaggactgtgtggtgatgatctggcatgagaacggccaatggaacgacgttccctgc
aactaccacctgcccttcacctgcaagactggcccag
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