Coregonus clupeaformis (lake whitefish): 123491172
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Entry
123491172 CDS
T08357
Name
(RefSeq) patched domain-containing protein 3-like
KO
K24682
patched domain-containing protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
123491172
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Other domain-containing proteins
Patched domain-containing proteins
123491172
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
MMPL
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
123491172
NCBI-ProteinID:
XP_045076956
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All DBs
Position
7:complement(12679951..12699341)
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AA seq
882 aa
AA seq
DB search
MGCQRTDCIEKPLSNLFEKFGRIVGTYPVWFFVITLIVSGILGGGFYFLKDREDNDIERQ
FTPRSGPSKIARAFVKENFPNDDAEFSSQRVYEEGNYASIIMVSNDESNILSTEPFENII
KVNNKVKDISVDVDQRELRFNHLCAKTNGHCVSNEIMEIIDFNASRIEQTNITFPLYTHK
SRQIFLGSAIGGVRATNKSEVKSAKAVKLFYFLESHTTRAEAWLKEFLRILSDERDNENI
KVSYYTSRSKQEEIEKHTTDGIPLFSTTYALAIAFSVISCLRLDNVRNKVWVAAIGVLSA
GLAVLSSFGLMFYIGMPFVITVANCPFLILGIGVDDMFIMVSNWQQTNVKDPVEKRMAHT
YKEAAMSITITTLTDVLGFYIGLMSDFPSVQYFCLYTSTAIIFCYIYNITFFGAFLALNG
RRERSNRHWLTCMKIPSENPKECSNGYSMCCVGGNYDKDTGTEKEQPINNLFKKYYGPSL
TKPWTKVIVIFIYAGYLATSIYGCFQIQQGIDLRDLAADDSYVIPYYDNDRQYFSTYGPN
VMVIVSEKFPYWDKNKRSELHSCMDDFKKLQFIADDLYTSWLDYYEGYARSTHLNIDDEI
VFSANVFLFLNLYPDFKQDVNFTSNAIHASRFFIQTVNIVNASMEIEMVNSLKETAESCS
VVPLMVYHPAFIYYDQYAVIVSGTLQNIGVTTAVMLIIALLLIPNPLCSLWVTFSIASVI
VGVTGFMALWDVNLDSISMIILVVCIGFTVDFSAHISYAFVSSKKSSGNERVVDALFTLG
YPIVQGASSTILGVVVLAASNNHIFRTFFKIMFLVMLFGLIHGITFLPVFLTLFTRNSEK
QKMALRRCPSTQLSHTPPPLRHGCIPPASASSLDEMPPAQTA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggctgccaacgtacagactgcattgagaagcccttgtcgaatctctttgagaaattt
ggacgaattgttggcacctacccggtctggttttttgttataactctgatagtgtccgga
attctgggaggtgggttttattttctgaaagacagggaagataatgacattgaacgacaa
tttacaccaaggagtggaccctcaaagattgctagggcttttgtcaaagagaactttcca
aatgacgacgcagagttttcaagccagagggtctatgaagaagggaattacgcatcaatc
atcatggtatccaatgacgaatcaaatattctaagcacagaaccttttgagaacattatc
aaagtgaacaataaagttaaagatatctcagttgatgtagaccaaagggagttgaggttc
aaccatttatgtgcaaagacaaatggacattgtgtgtcaaatgagattatggaaattatt
gacttcaacgcaagcagaattgagcagacaaacattacttttcctctatatacacacaaa
tcaagacaaatctttctgggatctgcaataggtggggttcgagcaactaacaaaagtgaa
gtcaaaagtgccaaagctgtaaagcttttctacttcttggaaagtcacaccaccagagct
gaggcatggttaaaagaattcctaaggatcctatcagatgagagagacaatgaaaatatt
aaggtgtcttactatacatcacgatcaaagcaggaggagatcgaaaaacacaccacagat
gggattccattgttctcaaccacatatgcccttgccatcgccttttcagtcatatcttgc
ctaaggctggacaatgtgaggaacaaagtgtgggtggctgccattggtgtcctctctgct
ggcctggctgtgctctcctcatttggattgatgttttacattggaatgccctttgtcatt
actgtggcaaactgtcctttccttatacttggaattggtgtcgatgacatgttcatcatg
gtgtcaaactggcagcagaccaatgtcaaagaccccgtggagaaacgcatggcacacacc
tacaaagaagctgccatgtctataaccatcaccaccttgactgacgtccttgggttttac
attggactcatgtccgactttccgtcagtacaatatttttgcctgtatacaagcactgcc
attatattttgctacatttacaatataacattctttggagctttcctggcattgaatggg
aggagagaaagaagcaacagacactggttgacttgcatgaagattccatctgagaatccc
aaagaatgttctaatgggtatagtatgtgctgtgtgggagggaactatgataaagacact
gggacagagaaagaacaaccaatcaataatttatttaagaaatactatggtccttctctg
acaaaaccatggaccaaagtaattgtaatctttatttatgctgggtatttggccacaagt
atctatgggtgttttcaaatacagcaaggaattgatcttcgtgatttggcagctgatgac
tcttacgttattccatattatgacaatgacaggcaatacttctctacttatggtcctaat
gtcatggtaattgtcagtgagaaatttccatattgggataagaacaaacgatctgaactc
cactcctgcatggatgactttaaaaagcttcaatttattgcggatgatttgtatacatcc
tggcttgattactatgaaggctatgcacgaagtacacatttaaatattgatgatgaaatt
gtattcagtgcaaatgtatttctttttctgaatttgtaccctgattttaagcaagatgtg
aacttcaccagtaatgctatccatgcttctcgattcttcatccaaactgttaatatagtc
aatgccagtatggaaattgaaatggtcaacagtcttaaagaaacagcagagagttgtagt
gttgtcccattgatggtttaccacccagcattcatctactatgaccagtatgctgttata
gtgagtggcaccctccagaatattggagtcacgacagcagtcatgttgattatcgccctc
ctactgattcctaaccctctctgttctctgtgggtgacattctctattgcttctgtcatt
gtgggcgtcactggtttcatggcattgtgggacgtcaatctagactccatatccatgatc
attcttgttgtctgcattggtttcaccgttgacttttctgctcatatatcctatgccttt
gtctcgagcaaaaaatcgagtggcaatgaaagagttgttgatgctctctttactttgggc
tatcccatagtacaaggggctagttcgaccattttaggtgtggtggttttggctgcctca
aataatcatattttcaggactttttttaagattatgttcttggtaatgctttttgggctg
attcatggcatcactttcctcccagtgtttctaactttattcacacgcaactcagaaaaa
caaaaaatggccctcaggagatgccccagcacccagctgtcacacaccccccctcccctc
cgtcacggctgtattcccccagcctcagcctcctccctggatgagatgcctccagcccaa
acagcgtga
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