KEGG   Coregonus clupeaformis (lake whitefish): 123491223
Entry
123491223         CDS       T08357                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013  Nucleocytoplasmic transport
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123491223
  09122 Translation
   03013 Nucleocytoplasmic transport
    123491223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    123491223
   03041 Spliceosome [BR:cclu03041]
    123491223
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     123491223
Spliceosome [BR:cclu03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    123491223
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_WDHD1_1st WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR5 Beta-prop_TEP1_2nd Beta-prop_NOL10_N WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_EML WDR55 ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd EIF3I WD40_Gbeta NBCH_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd TRM82_WD CFAP251_N DSE1_N Beta-prop_CAF1B_HIR1 WDR54 Beta-prop_IP5PC_F Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_WDR90_POC16_2nd Beta-prop_ACSF4 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_TEP1_C Beta-prop_NUP159_NUP214 WD40_like Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_WDR75_1st
Other DBs
NCBI-GeneID: 123491223
NCBI-ProteinID: XP_045077289
LinkDB
Position
7
AA seq 323 aa
MGPVEQLHMTVFSQSFSPCGRFLAAGNNYGEIAVFSLSSALSPDATDLSQKPILTFTAHE
GPVFSLFSTDSHLLSAGNGEISAWSWAELIKRNTKAAWTRRPNYKSSLEIPEINAMTVNP
TENSLVIGGGDNNIHIMDLESGVFKSVLQGHTDYIHCLSVREREGEILSGGEDGAVRIWD
CRTGQSVHCIEVYKYEDCARPQYGKWISCLTTDSDWMLCGGGPSLSLWHLRSMSPTSIFP
LSGCQRQANFYQDMILSVGEGQCVSHCLLGGEVKAQIPCTPHSLNTLALNLNSTEHRVLT
VGGSSHQIDVFTNLSYRTFSLSF
NT seq 972 nt   +upstreamnt  +downstreamnt
atgggtcctgtcgagcaactccacatgaccgtgttctcccagagtttctctccctgtggt
cgcttcctagccgccggcaacaactacggcgagatagcggtgttcagtctctcctcagca
cttagcccagatgctacagatctgagccagaaacccatcctcacatttactgctcatgag
gggcccgtcttctctctcttctccacggactctcacctcctgagtgccggcaatggcgag
atcagcgcctggagctgggcggagcttatcaagcggaataccaaggctgcttggacaagg
aggccaaattacaaatccagcctggagatcccagagatcaatgccatgaccgtcaatccc
acagagaacagtctagtgattggtggaggggacaataacatccacataatggatctggaa
agtggcgtctttaagtcagttcttcagggtcatacagactacattcactgtctgagtgtg
agagagagggagggagagatcctctctgggggtgaggacggcgctgtcaggatatgggac
tgcaggaccggccaatccgtgcactgcattgaggtctacaaatatgaggactgtgcccgc
ccccaatatggcaagtggatcagctgcctgacaaccgactctgattggatgctctgtgga
ggaggcccatccctctctctgtggcacctccgctccatgtcacccacctccatcttccct
ctctccggatgccagcgacaagccaacttttaccaggacatgatcttgtcggtgggtgaa
ggccagtgtgtgtcccactgtctcctggggggagaggtaaaggctcagatcccctgcacc
ccccactccctcaacacgctggcactgaacctcaacagcactgaacacagggtgctgaca
gtaggtggaagcagtcaccagatagacgtattcaccaacctgtcctacagaaccttctcg
ctgtctttctga

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