Coregonus clupeaformis (lake whitefish): 123491972
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Entry
123491972 CDS
T08357
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123491972 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
123491972 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123491972 (lsm4)
03041 Spliceosome [BR:
cclu03041
]
123491972 (lsm4)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123491972 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
123491972 (lsm4)
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123491972 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
123491972
NCBI-ProteinID:
XP_045079466
LinkDB
All DBs
Position
11:complement(35861147..35864532)
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQQEKKPAGGKPQGVKNQH
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgttacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtataatggacacttggtcagttgtgacaactggatgaatattaattta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgaaataatcgacatggtgaag
gaggaggtggtgtccaagggccgcgggagagggggcatgcagcagaacaaacagcagggc
aagggtcgtgggggaggagcaggcagaggtgtgtttggaggccgtggccggggtatgcca
ggagtgggcatgccaggagtgggcagaggccagcagcagcaggagaagaagcctgcaggt
ggcaaacctcagggagtcaagaaccagcactga
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integrated database retrieval system
