Coregonus clupeaformis (lake whitefish): 123491973
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Entry
123491973 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123491973
03015 mRNA surveillance pathway
123491973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123491973
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123491973
5.6.2.5 RNA 5'-3' helicase
123491973
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123491973
mRNA cycle factors
Common to processing body (P body) and stress granule
123491973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
ATPase
SLFN-g3_helicase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
UvrD_C_2
AAA_16
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
123491973
NCBI-ProteinID:
XP_045079468
LinkDB
All DBs
Position
11:35874123..35890010
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AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVFCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGELAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSNAGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVIPPMPPPGYLAQANGPAAGRGGALKGKAGRGGRQRTRGMGNHGGSG
QSNGPNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
gcggaactacttggggctgatacccagggctcggagtacgagtttaccgattttactcta
cccagccagacgcaaactcaaggccaaacccagagtcagctggacaatcaggtgaatggt
cctgatgaagggcttcacaatggaggtgtcgatgatgtggccaaggcgagccaactcctc
gctgagttgaacttcgaggaggatgaagaggacacctattacaccaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatgtgtggtgttctgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatagtgaaccacttg
gtgagagcaaaatgcaaagaggtgactctgcacaaagacgggccgctgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccccgccaag
gccgactcagtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaag
gacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcc
tggctggttaagatcccctcggagcaggagcagctccgggcccgccagatcaccgcccag
cagatcaacaagctggaggagctctggaaggacaatcccacggccactctggaggacctg
gagaagcccggtgtagacgaggagccacagcatgtgctgctgcgctacgaggatgcctac
cagtaccagaacatcttcggccccctcgtcaagctggaggccgactacgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctaaataaaaag
cggattgcctatttctccttacccaagacggattcaggtgacatgcgactgatgcaggga
gatgagatatgtctgcgctacaaaggagagctggccccactctggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagctcctgtagaaataccccacaacttccaggtggatttcgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acgtccgtgtcgggttacatctaccacaagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagttgcccaaacgcttcactgcccagggcctgcccgacctcaaccactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggcccccct
ggcactgggaaaacggtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
gggcccgtgctggtgtgtgctcccagtaacatcgcagtggaccagctgactgagaagatc
cacatgtcgggtctgaaggtggtcaggctgtgtgctaagagcagagaggccatcgactcc
cctgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagcta
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgatgagaagcgc
taccgggccctaaagcgcaccgctgagagagagctgctcatgaacgcggatgtgatctgc
tgtacttgtgtgggggcaggagacccccgtctggccaagatgcagttccgctccatcctc
atcgatgagagcacccaggccaccgagccagagtgcatggtacccgtggtcctgggtgcc
aagcagctaattctggtaggagaccactgccagcttggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtctttgtttgagcgtctggtggtgctgggcatcagg
cccatccgtctgcaggtgcagtaccgcatgcacccggccctcagcgccttcccctccaac
atcttctacgagggctccctgcagaatggagtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccacagccagacaagcccatgttcttctacgtgactcaaggccag
gaggaaatcgctagctctggaacatcctacctgaacagaactgaggcagctaatgtggag
aaaatcaccaccaggctgctgaaggctggagccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagtttagcggctccctccac
accaagctctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaag
gacttcatcatcctgtcatgcgtccgagccaacgagcaccagggcatcggcttcctcaac
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcatcgtgggt
aaccccaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtagagggacccctcaacaacctgagagagagcttgatgcagttcagc
aagccccgcaagctggtcaacgccattaaccctggagcccggttcatgagcactgccatg
tatgacgcccgcgaggccctcatccctgggtctgcctatgatcgcagcaacgcagggcgt
ccatccaacatgtacttccaaacccacgaccagatcggcatgattggggccgggccagcc
cacatggcggccatgaacatgcctattcctttcaacttggtgatacctcccatgcctccg
ccaggctacctggcccaggccaacggccctgctgcaggtcgtggtggggcgctgaagggc
aaagcggggcgtggcgggcgccagaggacccgcggcatggggaaccacggtggcagtggg
caaagcaacgggccaaacagccaggccagccaggacgtgtcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagccagccctcccagatgagccagcctggc
ctctcccagcctgaactgtcccaggacagttatctaggtgatgagttcaagtcccagatc
gacgtggctctatcgcaggactcgacttaccagggtgaacgtgcataccaacatgggggg
gtgactggactgtcacagtactaa
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