Coregonus clupeaformis (lake whitefish): 123491974
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Entry
123491974 CDS
T08357
Symbol
ddx49
Name
(RefSeq) probable ATP-dependent RNA helicase DDX49
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
123491974 (ddx49)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123491974 (ddx49)
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
Helicases
123491974 (ddx49)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
123491974
NCBI-ProteinID:
XP_045079470
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All DBs
Position
11:complement(35890038..35905374)
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AA seq
478 aa
AA seq
DB search
MSDFSSLGLSDWLIQQCKQMGISKPTQVQENCMPPILEGRDCMGCAKTGSGKTAAFVLPV
LQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPMGLRDCIIVGGMDMITQALELSKK
PHIVVATPGRLADHIRSSDTFSIKKIQFLILDEADRLLEQGCTDFTKDLEVILAAVPAKR
QTLLFSATLTDTLQELKGIAMNKPFFWESKSEVRTVEELDQRYILTPEKVKDAYLVHLIQ
KFQDEHDDWSIMIFTNTCKNCQILTMMMQKFNFPTISLHSMMKQKQRFANLAKFKSSVFK
ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRHGVSITLVTQYDIHLV
HSIEGQIQAKLKEYPVKEKEVLKILTQVNVARRECEIKLESTDFDEKKEINKRKQMILEG
KDPDVEAKRKAELEKIRGEKRKFKERIQETIQKKQHGMQKKKLMKQKHIQKKKAVKST
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatttttcctctctcggtctgtcagattggctgattcaacaatgtaaacaaatg
gggatcagtaaaccaactcaagtccaggaaaactgtatgccacctattctggaaggtcgg
gattgtatgggttgtgccaagactggcagtggaaagacagccgcctttgtgctaccagtg
ttacagaaattatctgaggacccatatggcatcttctgtttagttctcacacctaccagg
gaattggcttaccagattgccgaacagttcagagtcctgggaaaaccaatgggcttgcgg
gactgcatcattgttggtggaatggatatgatcacacaggccttggaactctctaagaag
ccccacatcgttgtagccactccaggaagactggcagaccacattcggagctccgacacc
ttcagcatcaagaagatccagtttctgatccttgatgaggccgaccgcctgcttgagcaa
ggctgcacagacttcaccaaagacttggaggtgatcctggccgcggtgcctgccaaacgc
cagacgctgctgttcagtgccaccctcacagacacattgcaggagctcaagggcatcgcc
atgaacaagcccttcttctgggagagcaagtcagaggtccgcacggtagaggagttggat
caaaggtacatcctgacaccagagaaagtgaaagatgcctacctggtgcacctgatccag
aagtttcaagacgagcacgacgactggtccatcatgatcttcaccaacacctgcaagaat
tgccaaatcctcacaatgatgatgcagaaattcaactttcctaccatctccttgcattca
atgatgaagcagaaacaacgtttcgccaacctcgcaaagttcaagtccagtgtcttcaaa
attctgattgcaactgatgtggcttccaggggtctggatattccaacagtccaggttgtc
atcaaccacaacactccaggtcttcccaagatctacattcacagagttggccgaactgcc
agagcaggaaggcatggtgtctcgatcacactggtgacgcagtatgacatccacttggtt
cattccatcgaggggcagatccaggccaaactgaaggaatatccagtgaaggagaaagaa
gttctgaagatccttactcaagtcaacgtggccagacgggaatgtgaaattaaactggag
tcaacagattttgatgagaaaaaggagatcaacaagagaaaacagatgattttggagggg
aaagatccagacgtggaggcaaagagaaaggctgaactggagaagataaggggtgagaag
aggaagttcaaggagaggatacaggaaaccattcagaagaaacaacacgggatgcagaag
aagaaactgatgaagcaaaaacacattcaaaagaaaaaggcagtgaagtccacataa
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