KEGG   Coregonus clupeaformis (lake whitefish): 123492007
Entry
123492007         CDS       T08357                                 
Name
(RefSeq) ubiquitin-60S ribosomal protein L40
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03010  Ribosome
cclu04120  Ubiquitin mediated proteolysis
cclu04137  Mitophagy - animal
cclu04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    123492007
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    123492007
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    123492007
   04137 Mitophagy - animal
    123492007
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:cclu03011]
    123492007
   04121 Ubiquitin system [BR:cclu04121]
    123492007
Ribosome [BR:cclu03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    123492007
  Archaea
    123492007
Ubiquitin system [BR:cclu04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   123492007
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Ubiquitin_5 zf-C4pol OTU1_UBXL Dsc3_N UBL_UBAC1
Other DBs
NCBI-GeneID: 123492007
NCBI-ProteinID: XP_045079556
LinkDB
Position
11:complement(35969599..35971181)
AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
LRPKKKLK
NT seq 387 nt   +upstreamnt  +downstreamnt
atgcagattttcgtgaagacgttgacggggaaaaccatcacccttgaggttgagcccagc
gatactattgaaaatgtcaaggccaagatccaggataaggaaggtattcctcctgatcag
cagcgtctgatcttcgctggcaaacaacttgaggatggtcgcaccttgtcagactacaac
atccagaaagagtccaccctgcatcttgtgctgcgtcttcgcggaggcattatcgagcca
tctctgagacagctggcccagaagtacaactgtgacaaaatgatctgccgcaagtgctat
gctcgcctccatcctcgtgctgtcaactgccgcaagaagaagtgcggacacaccaacaat
ctgcgccccaagaagaagctgaagtaa

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