Coregonus clupeaformis (lake whitefish): 123492052
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Entry
123492052 CDS
T08357
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
123492052
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
General mRNP proteins
123492052
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Ortholog
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GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
RBD_DEAH11
PRP38_assoc
CDC45
Motif
Other DBs
NCBI-GeneID:
123492052
NCBI-ProteinID:
XP_045079882
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All DBs
Position
12:54881199..54933092
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AA seq
542 aa
AA seq
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MADDFDIEAMLEAPYRKDEIKHSSPNGHEERSKKKKKSRSRSRDRKRSKSRDRKKSHDHK
RSRSRERKLSRSRERRRSRTRSRERSGRYRDHKTTFSGPKFNGGSRGKIGPPPVIKLSRR
RSRSRSPFKKEKSPVRQVFLGEMTHKNSIRQPIDNLTPEERDARTVFCMQLAARIRPRDL
EEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQ
VMAEKNRAAAMANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSET
SRSKGYGFITFSDTECAKKALDQLNGFELAGRPMKVGHVTERTDASTASSFLDSDELERT
GIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGAIAIGAMAAVSAAMNPAMNMNNMN
RNTAMNLPSQPLATHCFQLSNMFNPQSEDDPGWDADIQHDVIEECNKHGGVVHIYVDKNS
TEGNVYVKCPTIPAAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVTATQLLIPRA
RR
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgactttgacatagaagcaatgcttgaggctccatatcgaaaggatgagatc
aagcacagtagtcccaatggccacgaggaacgcagcaagaagaaaaagaagagcaggagc
cgaagcagagacaggaagagaagcaaaagccgggatcgcaagaagagccatgatcacaag
cggagccgcagccgcgagcgaaagctgagccgtagcagggagaggcgccggagccgcact
cggagcagggagcgcagcggccgctacagggaccacaagaccaccttctctgggccgaaa
tttaacggtggttccagagggaagattggccctccaccagtcatcaagctaagccgaaga
cgttccagaagccgaagccctttcaagaaagagaagagtcctgtgaggcaagtgttcctt
ggggagatgacgcataagaactcaatcaggcagccaatagacaacctgactccagaggaa
agggacgctcggacagtgttctgcatgcagctggcagccagaatccgaccacgagacctg
gaggagttcttctctgcagtgggaaaagtgagagatgtgcgcatgatctctgacagaaat
tcgaggaggtcgaaggggattgcttacatcgagtttgtggaggccaactcggtgccactg
gctataggattgtctggccagcgacttctgggggtgccaataattgttcaggcctcacag
gtaatggctgagaaaaacagggctgctgccatggccaacaacctgcagaagggaaacgct
ggcccgatgagactctacgtcggatccttacactttaacatcacagaggagatgctgcga
ggaatctttgagccttttggaaagattgagagtattcagctcatgatggatagtgagacg
agcagatccaaaggatatggcttcatcactttctcggacacagagtgtgccaagaaggct
ctggatcagttgaacggttttgagctggccggccggccgatgaaggtgggccatgtgact
gagcgcacagacgcctccaccgccagctccttcctggacagcgatgagctggagaggacg
ggcatcgacctgggcaccaccgggcgcctgcaactcatggcccggctggctgaaggcact
ggactgcagattcccccagcagcacagcaagccctgcagatgagtggggccattgcaatt
ggtgcaatggccgctgtatcagctgccatgaatcctgcaatgaatatgaacaatatgaac
aggaatacagctatgaacctgccatcacagccacttgctacacactgtttccagctgtct
aacatgttcaaccctcagtctgaagatgacccaggatgggatgctgacattcagcatgat
gtcattgaggaatgcaacaaacatggaggagttgtgcacatatacgttgataagaattcc
acagaaggcaacgtgtatgtgaaatgtccaaccattcctgctgccatggctgcagtaaac
gcattacatggtcgatattttgcaggtaaaatgatcacagcggcatacgtccctctcccg
acatatcacaaccttttccctgactctgtgacggctacccagctcctgatccctcgtgct
cgccgatga
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