Coregonus clupeaformis (lake whitefish): 123492062
Help
Entry
123492062 CDS
T08357
Name
(RefSeq) syndecan-4-like isoform X1
KO
K16338
syndecan 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04512
ECM-receptor interaction
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123492062
04514 Cell adhesion molecule (CAM) interaction
123492062
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123492062
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
123492062
Proteoglycans [BR:
cclu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
123492062
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
123492062
NCBI-ProteinID:
XP_045079908
LinkDB
All DBs
Position
12:55753930..55765131
Genome browser
AA seq
209 aa
AA seq
DB search
MNKVFLVLFLFASVYSESQVRETETWMPMKMTQAVSRDELVASGDGSDFGFPDEEHDTFD
NEDDTEDEDYDDFSGSGDGVTTITIKNDNTMTKPDMNDNNIPDLDRSLRPKPTPNDIELV
QKNNEVSVRGVPNPEEHLPNVLMAHAGEESIFRKTEVLAALIAGGAVGLLFAVFLILLLV
YRMKKKDEGSYDLGKKPIYKKAPTTEIYA
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagtgttcctcgtgttgtttttatttgcctccgtctactctgagtcgcaggtg
cgggagactgagacatggatgcccatgaagatgacccaagccgtgtcgcgtgacgagctt
gtcgcgtctggagacggctccgacttcggcttccccgatgaggagcacgacacatttgac
aatgaggacgacacggaagatgaggattatgacgatttctctggctctggagatggagta
actactattacaatcaaaaatgacaataccatgacaaagcctgacatgaacgacaacaac
attccagacctggacagatccctgaggcccaaacccacaccgaatgacattgaactggtc
cagaagaacaatgaagtgtcagtgcggggtgttcccaaccccgaggagcacctaccgaat
gtactgatggcccatgcaggggaggagagcatcttcagaaaaacagaggtcctagcagct
ctgattgctggtggagcagtggggctgctctttgctgtcttcctcatcctcctgctcgtc
taccgcatgaagaagaaggacgaaggcagctacgacctgggaaagaagcccatctacaaa
aaggctcccaccacagagatctacgcctaa
DBGET
integrated database retrieval system
