Coregonus clupeaformis (lake whitefish): 123492670
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Entry
123492670 CDS
T08357
Symbol
mex3b
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-binding protein MEX3B
KO
K15686
RNA-binding protein MEX3 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123492670 (mex3b)
04121 Ubiquitin system [BR:
cclu04121
]
123492670 (mex3b)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123492670 (mex3b)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123492670 (mex3b)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123492670 (mex3b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_Vigilin
zf-C3HC4_3
KH-I_KHDC4-BBP
zf-C3HC4
RING_XB3-XBAT31
Prok-RING_4
KH_DEAH11_2nd
zf-RING_UBOX
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
123492670
NCBI-ProteinID:
XP_045081357
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All DBs
Position
15:64532406..64536182
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AA seq
549 aa
AA seq
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MPSSLFAEMERNGSNQENALDDQRALQLALDQLSLLGLDNDENGLYDNESSRKSVNMTEC
VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIIS
AAEHFSMIRASRNKNTSINGTTGRWYPAPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATI
KRIQQTTHTYIVTPSRDKEPVFEVAGMPENVDRAREEIEAHITMRTGGLIELQDENDFHA
NGTDVGFDIHGHPTLWSKPSNPQSAAPTSGRKPFSNYRNDSSSSLGSASTDSYFGTNSGS
RMADYSPPSPALSYTATNGNNNNNNLNINTNGNGFVYGGDVISPDCTDMTFGDTSPGFNP
TPAPPGLLWSQYERGMTPSSSSSSSPTSTSSAIYPSANASTNANGMATSQRRMNGGSTPQ
PRLSPPLHNNHAPEATDHPLARRVRSDPEGSXLGFTGYPSSNGMASLPGPHLPGVPCDSS
ASSSSSSSSTSRKGSRDCSLCFESEVIAALVPCGHNLFCMECANRICQRSEPKCPVCHTG
VTQAIRIFS
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgcctagctcgctgttcgcggagatggagaggaatgggagcaaccaggagaacgccctg
gacgaccagagagccctgcagttagccctggaccagctctccttgctcggcttggacaac
gacgagaacgggctatatgacaacgagtctagccggaagagtgtcaacatgaccgaatgt
gtccctgtgcctagttcggagcatgtagctgaaattgtcggtagacaaggatgcaaaatc
aaagcgctacgagccaagaccaacacctacatcaagacgcccgtgcgtggcgaggagccg
gtgttcgtggtgacagggaggagggaggacgtcgctatggccaggagagagatcatctct
gcggccgagcacttctccatgatccgggcctcccggaacaagaacacaagcatcaacggg
acgacggggaggtggtacccggcccctggaccccccaacctaccgggccagaccaccatc
caagtccgcgttccttacagggtggttgggctggtcgtgggtcccaagggggccaccatc
aagcgtatccagcagacaacccacacctacatagtgactcccagccgggacaaggagccc
gtgtttgaggtggcgggcatgcctgagaacgtggaccgcgctcgggaggagatcgaggcc
cacatcaccatgcggactggtggcctcattgagctccaggacgagaacgacttccatgcc
aacggcacggacgtcgggtttgacatccatggccaccccaccctgtggtccaagcccagt
aacccgcagagcgccgccccgacgtctggacgcaaacctttctccaactaccgcaacgac
tcatcatcctccctgggcagcgcgtccacagattcctactttggcaccaacagcggctcg
cgtatggcggactacagccccccctccccggcgctcagctacaccgccaccaacggcaac
aacaacaacaacaacctgaacatcaacaccaacgggaatggctttgtctatggtggcgac
gtcatctcgcccgactgcactgacatgaccttcggcgacacctcgcccgggttcaacccc
acgccggccccgcccggcctcctctggtcccagtacgagcgggggatgactccctcctcc
tcctcctccagctcccctacctccacctcctccgctatctacccatcagccaatgcttcc
acgaacgccaacgggatggcgacgagccagaggaggatgaacggcggctctaccccccag
cctcgcttgtccccacccctccacaacaaccacgcgccggaggccaccgatcaccccctg
gcccggagagtccgcagcgacccggaaggaagcnccctgggcttcaccgggtaccccagc
tccaacggcatggcctccctgcccgggccccacctccccggggtgccctgcgactcctca
gcctcctcttcatcctcttcctcctccaccagccggaagggcagtcgcgactgctccttg
tgcttcgagagcgaagtaattgcagctctggtgccctgtggccacaacctcttctgtatg
gagtgtgccaaccgcatctgccagaggagtgaacccaaatgccccgtgtgccacactggg
gtcactcaggccatacgtatattttcataa
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