Coregonus clupeaformis (lake whitefish): 123492712
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Entry
123492712 CDS
T08357
Name
(RefSeq) exosome complex component RRP40-like
KO
K03681
exosome complex component RRP40
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123492712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123492712
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123492712
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP40_S1
KH_6
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
123492712
NCBI-ProteinID:
XP_045081526
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All DBs
Position
2:complement(18127299..18129999)
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AA seq
188 aa
AA seq
DB search
MIDDIFKEVGQGETTVSPIIQQANQHRLNIVHQYVPAKGESVIGIVPAKSGDIFKVDLEG
SEQVSLSYLAFEGATKRNRPNAQVGDQVCSQFIIANKDMCLDSCGRANGDGGVWSQQASL
QGIPETCTQSVIAKDLEKYVPFEMVVGMNGHVWVKAKTIQQTLIVANPLKSCENMTAQQD
GRMADGSF
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgacatatttaaggaggtgggacagggagaaactactgtgtcccctattatt
caacaggcaaaccaacatagactgaacattgtgcaccagtacgttccagccaagggggag
agtgtgatcggcatcgtacctgccaagtcaggtgacatcttcaaggtggatttagagggg
agtgagcaagtgtcactctcctacctggccttcgagggggctaccaagaggaatagacct
aatgcgcaggtgggggaccaggtgtgctcccagtttatcattgccaacaaagacatgtgt
ctagacagctgtggacgagccaatggggatgggggtgtttggagccagcaggcttctctt
caaggtatccctgagacttgtacacagagtgtgatagccaaggacctggaaaaatatgtc
ccctttgagatggtggtggggatgaacgggcacgtgtgggtcaaggccaagaccatccag
cagaccctcatcgtagccaacccgctgaagagctgtgagaacatgacggcccagcaggat
gggaggatggccgacggatccttttag
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