Coregonus clupeaformis (lake whitefish): 123493086
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Entry
123493086 CDS
T08357
Name
(RefSeq) collagen alpha-1(XXIII) chain-like
KO
K24355
collagen type XXIII alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
123493086
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123493086
BRITE hierarchy
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GFIT
Motif
Pfam:
Collagen
Ac45-VOA1_TM
Motif
Other DBs
NCBI-GeneID:
123493086
NCBI-ProteinID:
XP_045082877
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Position
2:complement(21333982..21651312)
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AA seq
590 aa
AA seq
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MDSTVDNRESKAALRPCAPRSLLMRCLVGFPTVVCFMFSVSSIAVCLLMSLKTYQLENRL
HALEMEKNTAFNPPESAFTREDGTVIPALRSSIETLLQERLSEVMPKLRTARDIPQECSC
PPGPPGKRGRMGRRGDPGAPGKTGRDGYPGPLGMDGKPGLPGPKGSQGPAGTKGDKGDQG
DIGPRGPPPHNSYAGLHSNQILTVKGDQGSAGPPGPPGPPGSPGPRGPPGNTGKDGPRGP
AGEQGFPGRDGMDGHAGSPGKPGEDGEPGYTGPQGPPGSKGQTGERGMVGLPGFKGDKGD
IGEQGAQGDMGYHGEKGVPGSTEVIDFNGKLLEAFQAIQTISVRGPPGLPGPPGGKGEIG
LPGPSGLDGEKGPKGDMGETGSIGEKGEKGEMGLSGPGGIDGQKGEKGDSRLEDNLVQMI
SQPGPPGPPGLPGPPGYMGHHGMPGPKGEPGDRAKGEKGDIGPAGLRGMDGPQGPPGPTG
LVGLPGTKGEKGKSGEPGMDGFPGLIGEKGARGDRGDKGDRGTMGKRGLKGGKGEQGPPG
LDQPCPVGYNGTKGLSDEGVQSTPPPPPSGPEAPCPLGQDGLPIPGCWHK
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggattcaacggtggataaccgggagagcaaggcagcgctacgtccatgtgcgcccagg
tcccttctcatgcgctgtctggtcggattccctacggtggtgtgtttcatgttttccgtg
agctccatagccgtctgcctgctcatgagcttgaagacttaccaactggagaaccgactg
catgcgctggagatggagaaaaacacagcgttcaacccgccggagagcgccttcacgcgc
gaggatgggactgtaataccggcgctgaggagttctatcgagacgctactgcaagagaga
ctgagtgaagtgatgcccaagctgcgtacggcgagggacatcccccaagagtgttcctgc
ccaccaggtcctcctggaaagcgtggaaggatgggaagaagaggtgatcccggcgctcca
ggcaagacagggagagatggatacccgggcccgctcggcatggatggcaaaccaggtctc
cccggtcctaaaggaagtcagggaccagcaggaaccaagggagataagggtgaccaagga
gatattgggccacggggccctcctccccacaactcatacgctggcctgcacagtaatcag
atcctcaccgtcaagggtgaccaggggtcagctggccccccaggcccccccggaccccca
gggtctcctggccccagaggccctcctgggaacacaggcaaagacgggccccgtggcccg
gctggagaacagggtttccctggtcgcgacggtatggacggacatgcaggttcacctgga
aagccgggtgaagatggtgaaccaggatacacaggaccacagggacccccagggtcaaag
gggcagactggtgagaggggcatggtcggactccctgggtttaagggagacaaaggagat
atcggagagcaaggagcccagggagacatgggttaccatggtgagaagggggttccaggc
tctactgaggtcattgacttcaatgggaagctgctagaagccttccaggccatccagact
atcagtgtcaggggcccaccaggattaccagggcccccaggaggaaagggagagataggc
ttgcctgggccatctggactggatggggagaagggtccgaagggagatatgggggagaca
gggtcaatcggagagaagggagagaaaggagagatgggtctctctgggccaggggggata
gatggacagaagggagagaagggagactccaggctggaagataacctggttcagatgatt
tctcagcccggccctcccggccccccaggactccccggacctccagggtacatgggtcac
catggaatgcctggccctaagggagagcctggagacagagctaaaggggagaagggagac
attggacctgctggactgaggggtatggacggtcctcagggtccccctggccccacagga
ttggtgggtctcccaggcaccaaaggagagaagggcaagtctggggagcctggaatggat
ggtttcccaggtctgattggagagaagggagcccggggagacagaggagacaagggtgac
cgggggacaatggggaagagaggtctgaagggtgggaagggggagcagggtccccctgga
ctggaccagccctgtcctgtgggttataatgggactaaaggactttctgatgaaggggta
cagtccacccctcctcctcctccttctggccctgaggccccctgtcctttggggcaagat
ggactgcccataccaggatgttggcacaagtga
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