Capnocytophaga canimorsus: Ccan_13610
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Entry
Ccan_13610 CDS
T01582
Name
(GenBank) ATP-dependent RNA helicase deaD-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccm
Capnocytophaga canimorsus
Pathway
ccm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ccan_13610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccm03019
]
Ccan_13610
03009 Ribosome biogenesis [BR:
ccm03009
]
Ccan_13610
Enzymes [BR:
ccm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ccan_13610
Messenger RNA biogenesis [BR:
ccm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ccan_13610
Ribosome biogenesis [BR:
ccm03009
]
Prokaryotic type
rRNA helicases
Ccan_13610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ParBc
CoA_binding_2
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEK23477
UniProt:
F9YQ58
LinkDB
All DBs
Position
1453695..1455434
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AA seq
579 aa
AA seq
DB search
MNLFEQLGLSEPIIKAINDMGFETPSEVQQKTIPVLLSDNTDIVALAQTGTGKTAAFGFP
LLEKIDADSKKTQGLILSPTRELCLQIASELKLYAKYMSKINVVAIYGGASIDEQAKNIK
KGAQIIVATPGRMQDMIRRELVDISAIDFCVLDEADEMLNMGFYEDITEILSHTPQDKYT
WLFSATMPQEVAKIARRFMNKPIEITVGSRNQASNNIRHEYYMVNGRHRYQALKRLADAN
PDIFSVVFCRTKKDTQAIAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRAKQIQMLVATD
VAARGIDVDDITHVIHYQLPDEAETYTHRSGRTGRAGKSGVSMVIIPKSEVRKIKTIEKI
IQQPFEAKKLPDGMEICEIQLYHLANNIKNVEVNSAIDDYLPAIHDVLQGIDRETLIKKM
VAVEFNRFYTYYKNAEDLNVSSSGENSQSTGNEVRYFINIGERDGYDWRSLKDFLKATLD
LGKDDVFKVDVKNSFSFFNTEIEHQDLVQSTFSDFKMDGRFINVEISKKGESSKSEKSRK
KRSEGKKNGTQSSKEKTKSRKQKASQTFENVFKKRKRRK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattagggctttccgagcccatcatcaaagccatcaatgatatg
ggctttgaaactccctccgaagtacagcaaaaaaccattcccgttttactttcagacaat
actgatattgtagctttggcacaaacaggtactggaaaaacagcagctttcgggtttcct
ttgttggaaaaaattgatgctgatagcaaaaaaacacaagggttaattctctctccgact
cgagagttgtgtttgcaaattgcttccgaactgaaactatatgccaaatatatgtccaaa
atcaatgtggtagctatttatggtggtgcaagtattgatgaacaggcaaaaaatatcaaa
aaaggcgctcaaattattgtagccactcctgggcgtatgcaagatatgattcgtcgtgaa
ctagtagatatttcagctattgatttttgcgtgttggacgaagccgacgaaatgctcaat
atgggcttttatgaggatattaccgaaatattgtcacacaccccacaagataaatatact
tggttgttttcggcaacgatgcctcaagaagtagctaaaattgcacgtcgttttatgaac
aagcctattgaaattacagtaggctctcgaaatcaagcctctaacaatatccgacacgaa
tactatatggtcaatggcagacatcggtatcaggctttaaaacgtctggctgacgccaat
ccagatatattctcagtagttttttgtcgcaccaaaaaagacacccaagcaatcgctgaa
aaacttattgaagacggatacaacgctgctgctctacacggtgatttaagtcaaaatcag
cgcgatttggtaatgaaatcgttccgtgccaaacaaatacaaatgttagtagccaccgac
gttgcagcacgaggtatagatgttgacgatattactcacgtaatacactaccaactccct
gacgaggcagaaacctatacccatcgcagtggaagaactggaagagctggtaaatcaggg
gtttctatggtaattattccaaaaagtgaagtccgtaagattaaaaccatcgaaaaaatc
atacaacaaccttttgaagccaaaaaactacccgatggtatggaaatctgtgaaatacag
ctctatcacttggcaaacaacatcaaaaatgtagaggtaaatagcgctattgatgattat
cttcctgctattcacgatgtgctacaaggcattgaccgtgaaacactaatcaaaaaaatg
gttgctgttgaatttaatcgtttttacacctattacaaaaacgcagaagatttgaacgtt
tcttccagtggtgaaaattcgcaaagtacaggtaatgaagttcgctactttataaacatc
ggggaaagagatggttacgattggcgttcactaaaagacttcttaaaagctacgcttgat
ttagggaaagacgatgttttcaaagtagatgttaaaaatagtttttcattttttaatacc
gaaattgagcatcaagatttggtacaaagcacattttctgattttaaaatggacggacgt
ttcatcaacgtggaaatttctaaaaaaggagaaagttccaaatcggaaaagtcaagaaaa
aaacgtagcgaaggcaaaaaaaatggtactcaatcgtcaaaagaaaaaacaaaaagccga
aaacaaaaagcttcgcaaacctttgaaaatgtttttaaaaaacgaaaaagacgaaaataa
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