Capnocytophaga canimorsus: Ccan_18850
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Entry
Ccan_18850 CDS
T01582
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ccm
Capnocytophaga canimorsus
Pathway
ccm03410
Base excision repair
ccm03430
Mismatch repair
ccm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ccan_18850
03430 Mismatch repair
Ccan_18850
03440 Homologous recombination
Ccan_18850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccm03400
]
Ccan_18850
DNA repair and recombination proteins [BR:
ccm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ccan_18850
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ccan_18850
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ccan_18850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEK24001
UniProt:
F9YT82
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All DBs
Position
complement(2037551..2039242)
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AA seq
563 aa
AA seq
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MHHWTFKPKPNPQIVEKLQKELNLSEIPATLLAQRGISDFEQAKSFFRPSLSDLHNPFLM
KDMEKAVQRVLKAIEKEEKILIYGDYDVDGTTSVSLMYLYLKRFTRQLATYIPDRYTEGY
GVSFQGVDYAATNGFSLIIALDCGIKDVEKVQYANEKGIDFIICDHHRPSQVIPKAVAVL
NPKQTDCNYPYKELCGCGVGFKLIQALNKQMKNPFEQIQPLLDLVAVAIGADIVPITGEN
RVMMYYGLQIMNENPSVGLTALLGLENKPVQMVDIVFRLAPRINSAGRIEHGMFAVKLLT
ESSYSQAFAKAKQIETFNNERKDLDGSIVQEALHQIQVNQEEEKSATVVYAPHWHKGVIG
IVASRLIETYYRPTVVFTKSGEKYAASVRSVQGFDVYEALEQCAEHIEQFGGHKYAAGLT
ILPEKYLLFKDKFEKVVAKTLPKELKSPQITIDTELPLEKINPKMFQILKQFEPFGPQNM
APIFYAKNVIDTGFAKQIGKDNNHLRLTIKDFKGEKFFTAIGFNLGNKLELIKSGKPFEI
VYSIEENHWNGNTSLQLKVRDIR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcatcattggacatttaagcccaaaccgaatcctcaaatcgtagaaaagctccaaaag
gagttgaatctcagcgaaattcccgctactttgttggctcagcgaggtatttccgatttt
gaacaggcaaaaagcttctttcgtccgtcactttccgacttgcataatccatttttgatg
aaagatatggaaaaagcagtccaaagagtgttaaaagccattgaaaaggaagaaaaaata
ctcatttatggcgattatgatgtagatggaacgacctctgtgtcgctaatgtatttgtac
ttgaagcgatttactcgccaacttgccacctatatccccgaccgatataccgaaggctat
ggagtttctttccaaggggttgattacgccgccaccaacggattttcgctcatcatcgct
ttggattgtggcatcaaagacgtagaaaaagtacaatacgccaatgaaaaaggcattgat
tttatcatttgcgaccatcatcgtccttcgcaagtaattcccaaagcggtagccgtctta
aatccaaagcaaaccgactgcaattatccatataaggaactttgtggctgtggcgtaggc
ttcaagctaatacaagctcttaacaagcagatgaaaaatccgtttgagcaaatccaaccg
ctattggatttagtagctgttgctattggggctgacattgtacccattacaggggaaaat
cgggtgatgatgtactatggattgcagattatgaacgaaaatccgtctgtagggcttact
gcattattaggactggaaaacaaacccgtacagatggtggatattgtatttcggttggct
ccacgaatcaattcagcaggaagaattgaacacggaatgttcgccgtcaaacttcttacg
gaaagttcttacagccaagcctttgctaaagccaagcaaattgaaacttttaataatgaa
cgtaaagaccttgatggaagtattgtacaagaggctttacatcagatacaagtcaatcag
gaagaagaaaaatcagccaccgttgtttatgctccgcactggcataagggtgtaattggc
attgtagcctcacgattgattgaaacttactatcgcccgacagtagttttcacaaaaagt
ggcgaaaaatacgcagcttcggtgcgttctgtgcaaggttttgatgtatatgaggctctg
gagcaatgtgctgaacacatcgaacaatttggaggacataaatacgccgctggactaaca
attcttcccgaaaaatatcttctttttaaagataaattcgaaaaagtagttgcaaaaaca
cttccgaaagaattaaaatcacctcaaataactattgatactgaacttccgttagaaaaa
atcaatcctaagatgtttcagattttaaaacaatttgaaccttttggtccgcagaatatg
gctcccatattttacgctaaaaacgtgattgatacaggctttgccaagcaaattggtaaa
gacaataatcatcttcggctcacaataaaagattttaaaggagaaaaattctttaccgca
ataggatttaatttgggtaataaactggagttgataaaatcgggcaaaccttttgaaatt
gtgtattccatcgaagaaaatcactggaacggaaacacttctttacagctaaaagtgaga
gatataagataa
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