Corynebacterium callunae: H924_08075
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Entry
H924_08075 CDS
T02507
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ccn
Corynebacterium callunae
Brite
KEGG Orthology (KO) [BR:
ccn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccn03019
]
H924_08075
Enzymes [BR:
ccn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H924_08075
Messenger RNA biogenesis [BR:
ccn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H924_08075
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
AAA_19
APHB_HrpA
HA2_C
AAA_22
WHD_HA2
nSTAND3
ResIII
NACHT
nSTAND_NTPase5
SLFN-g3_helicase
T2SSE
ABC_tran
PhoH
TsaE
AAA_30
AAA_25
Zeta_toxin
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AGG67057
UniProt:
M1UUQ6
LinkDB
All DBs
Position
1728270..1732178
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AA seq
1302 aa
AA seq
DB search
MTTSESSLSKAALYELLEGVSLSDERTFRRRLSKARAPKALSAIKADIDKASLLIDAKTQ
LIPEISYPETLPVSARRDDIAEAIRNNQVVIIAGETGSGKTTQIPKICLELGRGRRGLIG
HTQPRRLAARTVAERIADELGQEIGQTVGYAIRFDDQVSSKTAVKLMTDGILLAEMQRDR
FLNAYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFAEHFADADN
KPAPIIEVSGRTFPVEIRYRPLEIQEGDKTIDIDPLDGLCFALEELMEEGDGDILCFFAG
ERDIRDAMEAIEGRRWKGVEVTPLFGRLSNEEQHRVFSPHSGRRIVLSTNIAETSLTVPG
IHYVVDTGTARISRYSVRTKVQRLPIEPISQASANQRSGRCGRVADGIAIRLYSEEDFAS
RPEFTDPEILRTNLASVILRMASLRLGDINKFPFVQPPEQRSIRDGVLLLHELGALAEES
SEDGSPRLTPIGRDLALIPVDPRMARMLVEANKLGSLYPVMVIVAAMTIQDVRERPLEFQ
AQADQAHARFKDTNSDFLGFLKLWEYISDQREQSSGNAFRKQMKKEFLHYMRIREWWDLV
RQLEQVGQQLGWAKKENVANDAAPEVIHQSLLSGLLSQIGARDGESREFSGARGTKFMVF
PGSALAKKPPQFVMAGQLVETSRLWARDVAKIEAEWVEKLAGSLLKYQYSEPYWSSKRGA
AMVHRKSTLYGVTIIADKVVPYHTVDPVAARDLFIRHALIEGDWTTHHRFFHENAEKLEK
IGELEAKARRRDIVVDEDALFAFYDSKLPDNATTSRNFDSWWKKTSRQQPDLLDFDPEKL
MNEEASAISEEAFPDKWHKGNLVFDLTYHFEPGHRDDGVTVLVPIPVLGGLDAQGFDWLV
PGVRLDLVTELIRTLPKALRRTVVPAPEFAQRALALLHPYGSPLTSQLADALRSLGGTGI
NSSDFNPSKLPDHLRITYAAVDRHGKIVDRDKDLDKLKQRRANQIKASVSSVAKASEQDE
TKEWTAQTLGTIDETIETVVDGQKVSAYPALVVSPTGVSVKVLPTKAAADASMITATLTL
LMREIEVSAKQMVKGLPLQQKVAVDNYPHGGSEGLVGDARIAAIRDLMIANGGAVRSPEE
FQVLLEKVKPATPAAVRRTVVDLAPALVHYATLKSELSNWTGAAIEDMKSQLKFLLPKQA
ISIHGISRLRHLPRYLHAMEIRMEEMSQNPDRDADRQDEVNGVEEYLESRLNKLPSQRRN
TREVKDILWQIQELRVSLFAQRLGTPQPVSPQRIRKAVDKLR
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgactacttctgaatccagcctctccaaggcagcactgtacgaactcctcgagggagtc
tccctaagcgacgaacgcacgtttaggcgccgattgtccaaggcccgcgcccccaaggcg
ctcagtgccattaaggctgacatcgataaagctagtttgcttatcgacgcaaaaacgcag
cttattcccgaaatctcctaccccgaaacactgccagttagtgcgcgtagagacgatatc
gccgaggcaattcgcaataaccaagttgtgatcattgctggtgaaaccggatccggtaag
acaacccagattcctaaaatttgtttggaattgggccgcggccgacgtggattaattgga
cacacccagccgcgtcgtttggctgcgcgtacggtggccgagcgtattgcagatgaactt
ggccaggaaattggtcagaccgtaggttatgccattcgctttgatgatcaggtgtcttcc
aaaactgctgtgaagctgatgacggacggcatcttgcttgctgagatgcagcgcgaccgt
ttcctcaatgcttatgacaccatcattatcgatgaggcccacgaacgctctctcaacatt
gacttcatcttgggatatttgcgtcagcttttgcccaagcgccctgatcttaaagtcatt
attacctccgcaactattgatcctgagcgctttgccgagcattttgccgatgccgacaat
aagccagcaccaatcatcgaggtttccggacgtaccttccccgtagagatccgctaccgc
cccttggaaatccaagaaggcgataaaacaattgatattgatcctcttgatggcctgtgt
tttgcgctggaggaactcatggaagaaggcgatggagacattctctgtttcttcgccggc
gaaagagatattcgcgatgccatggaagctatcgaaggtcgccggtggaagggtgtggag
gtcaccccgctctttggtcgtctctccaatgaagaacagcaccgagttttcagcccccac
tccgggcgtcgcatcgtgttgtccaccaacattgctgaaacgtctttgacggttcccggc
attcactacgttgtagatactggtacagcccgtatttctcgctattctgtgcgcaccaaa
gtgcaacgcttgcctatcgagccaatctcccaggccagcgctaatcagcgttcgggtcgc
tgtggccgcgttgccgatggtattgctatccgcttgtactccgaagaggacttcgcctcc
cgtccagaatttactgaccccgaaattctgcgcaccaacctcgcgagcgtcattttgcgc
atggcctccttgcgcctgggcgatattaataaattcccctttgtgcagcctcctgagcag
cgctccattcgcgatggcgtgctgttacttcatgaacttggcgctctggcagaagaatcc
tctgaagacggctctcctcgcttaactcctattggccgtgatctagcacttatacctgtt
gatccgcgtatggctcgcatgttggtggaggccaataaacttggatccctctaccctgtc
atggtcattgttgcagccatgactattcaagatgtgcgcgaaaggcctctggaattccaa
gctcaagccgatcaagcccatgctcgtttcaaggacaccaactctgatttccttggcttc
ctgaagctgtgggaatacatttctgaccagcgcgaacaaagtagtggcaacgcttttaga
aagcagatgaaaaaagagttcctacactacatgcgaattcgcgagtggtgggatctggtg
cgtcagttggaacaagttggccagcagctcggctgggctaaaaaagaaaatgtagccaat
gatgccgcacctgaggttatccaccagtcattgctttctggtctgctttcccaaatcggc
gcgcgtgatggtgaaagccgcgagttctccggtgcacgtggcaccaagtttatggttttc
cctggctccgctcttgccaagaagccacctcagtttgtcatggccggacaattggtcgag
acgtctcgtctttgggctcgcgatgtagccaagattgaggccgaatgggtagaaaaactt
gctggctccctgctgaaatatcaatactccgagccttattggtcctctaaacgaggtgct
gcgatggtgcaccgcaagtcaacgctttatggcgtcaccatcatcgccgacaaggtggtt
ccctaccataccgttgatccagtagccgcccgtgatctcttcatccgccatgcgctgatt
gaaggcgattggactactcaccaccgcttcttccatgaaaatgccgagaagctagaaaaa
attggtgagcttgaagctaaggcacgccgccgcgacatcgttgttgatgaagacgccctc
tttgctttctacgactccaagctgccagacaacgccaccacctcccggaactttgactct
tggtggaagaagacttctaggcagcaaccggatctcctcgactttgatcccgagaaactc
atgaatgaggaagccagtgccattagtgaggaggccttcccagataagtggcacaagggg
aatctcgtctttgatctcacctaccactttgaacctggccaccgtgatgacggcgtgacg
gtccttgtccccattcctgttcttggtggtttggacgcccaaggcttcgactggctggtt
ccaggtgtgcgccttgacttggtcacagagctgattcgcaccctgcctaaagctttgcga
cgcacagtggtacctgcccccgagtttgcccagcgtgcactggctcttttgcacccatat
ggttcaccgctaacttctcaactagccgatgctttgcgctctttgggcggaactgggatt
aactcttctgattttaatccctccaaacttcccgaccatctgcgcattacctatgctgca
gtggataggcacggcaagatcgttgaccgcgataaagacttggacaagctaaagcaacgt
cgagcaaatcagatcaaagcctctgtatccagcgtcgctaaagcctcagaacaagatgag
actaaggaatggaccgctcaaaccctaggcaccattgatgagaccatcgaaaccgtcgtc
gatggtcaaaaggtttctgcttatccagcgcttgttgtctcccctacaggagtctcagta
aaggtacttccgactaaggccgcagctgatgcctcgatgatcacggcaaccttgactctt
ttgatgcgcgagattgaggtttctgcaaagcaaatggtcaagggcctgccgctgcagcaa
aaggtagcggttgataactatcctcatggtggctcagaaggtttagttggtgatgcccgt
atcgctgccattagagacttgatgattgccaatggaggtgcggttcgctcccctgaggaa
ttccaggtgcttttggaaaaggtgaagccggcaacaccagctgctgtacgacgcaccgta
gtagatctcgcccctgcgttggtgcactatgcaacgctgaaatctgagctttccaattgg
actggcgcagcaattgaagatatgaagtctcagctgaagttcctcctacctaagcaggct
attagcattcacggcattagccgattgcgccatttacctcgatatctccatgccatggaa
attcgaatggaggagatgagccaaaatcccgatcgtgatgcagaccgtcaagatgaggtt
aatggtgtcgaggaataccttgagtctcgtctaaataagctgccgagccaaagacgcaac
actcgcgaggtaaaggatattttgtggcaaatccaagagctgagagtaagtctttttgct
cagcgtttgggaaccccgcagcctgtttctccacagcggattagaaaagccgtggacaaa
ctgcgctaa
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