Campylobacter concisus 13826: CCC13826_0174
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Entry
CCC13826_0174 CDS
T00593
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cco
Campylobacter concisus 13826
Pathway
cco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCC13826_0174 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cco03021
]
CCC13826_0174 (rpoB)
03400 DNA repair and recombination proteins [BR:
cco03400
]
CCC13826_0174 (rpoB)
Enzymes [BR:
cco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCC13826_0174 (rpoB)
Transcription machinery [BR:
cco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCC13826_0174 (rpoB)
DNA repair and recombination proteins [BR:
cco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCC13826_0174 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ALF45180
UniProt:
A0A0M5MEC4
LinkDB
All DBs
Position
660860..665005
Genome browser
AA seq
1381 aa
AA seq
DB search
MLNSLYSGNRLRVDFSNVVKEIDVPNLLQLQKKSFDNFLNLNNNQTESGIEKVFKSIFPI
HDPQNRLTLEYVSSEIGKPKYTIRECIERGLTYSVNLKMKIRLIVHEKDDKTGDKVGVKD
IKEQEIFIREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKQEESATVANKLIYTAQII
PDRGSWLHFEYDTKDILYVRINKRRKVPVTILFRALGYKKQDIIKLFYPIQNLVIKNNKF
LTLFNPEDYLGRVEYDIKNEDGEVLHQAGKRLTKKKADKLIEDGVKFVEYPIEALIGRYL
ANPVINTESGEILYDTLSALDENKLAKILAEHESIDIINNSAAGVDDAIINSFIADNDML
KVLKQTEGVYDENDLAAIRIYKVMRPGEPVVKEAAKSFVNDILFNPERYDLTKVGRMKMN
HKLSLDVPEYVTLLTSEDIIKTAKYLIKVKNGQGHIDDRDHLGNRRIRSIGELLASELHL
GFVKMQKAIRDKFTSLSNNTDEIMPYDLINPKMITATIMEFFTGGQLSQFMDQTNPLSEV
THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNDL
GFVEAPYKKVVDGKVTDEIVYLTATQEEGNVIAPASTKLDENGHIVEDLIEVRKEGEMML
ARREDVTLIDLCSGMIAGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRSTAPIVGTGM
ESVIARDAWESVKAKRGGVVEKVDNKNIFILGEDEAGPYIDHYSLEKNLRTNQNTTFSQH
PIVKKGDEIVANQIIADGPSMEKGELAIGKNALIAFMPWNGYNYEDAIVISEKMIREDAF
TSVHIYEKEIEARELKDGVEEITKDIPNVKEEELMHLDESGIVKIGTEIKPGMILVGKVS
PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYASASMEGVVVDVKIFTKKGYEKDSRTNKA
YEEEKTLLEKEHHDRLLMLDREEMLKVTALLSKNPLASDQEVNKKEYKKGSKINKADFEN
INRFTLNAIVKSFSKDIQKKYDELKNYFQNEKKKLKEEHDAKIEILEKDDILPSGVVKLV
KVYIATKRKLKVGDKMAGRHGNKGIVSNIVREVDMPYLPSGQIVDIVLNPLGVPSRMNIG
QILESHLGLVGYRLGEQINEIFETKKGEWIKELRAKMIEIASVAKLMDAKKALGKMSDEK
LLEYAKDWSNGVRFATPIFEGVKADEFAKLFEMAKIDSDGKTELYDGRTGSKIRERVNVG
CMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLR
EMLTVKSDDVEGRLSAYKALTRGENVPETGIPETFFVLTNELKSLALDVEVYDEDETNET
N
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatagcttatactcaggaaatcgtcttagagttgacttctctaatgtcgttaaa
gagatagacgttccgaacctactacaactacaaaaaaagagctttgataattttttaaat
ctaaataacaatcagacagaaagcggtatcgaaaaagtttttaagtcgattttccctata
catgatccgcaaaatcgtttgactttagaatatgttagctcagagattggaaaaccaaaa
tatacaatcagagagtgcatagaaagaggtcttacatactctgtaaatttaaaaatgaaa
atacgccttatcgtacatgaaaaagacgataagactggtgataaagttggcgttaaagat
ataaaagagcaagaaatttttatacgtgaaattccgttgatgacagatagaatttcattt
attataaatggcgttgagcgtgttgttgtaaatcaactccatagaagccctggcgttatc
tttaaacaagaagagagtgcgactgttgcaaataaacttatctatacagctcaaataatt
ccagatcgcggatcttggttgcactttgaatatgatacaaaagatattttatatgttagg
ataaacaagcgcagaaaagtgcctgtaactatcttgtttagggcattaggatataaaaaa
caagacattattaagctattttatccaatacaaaatttagttattaaaaataataaattt
ttaactcttttcaatccagaggattatctaggaagagttgagtatgatataaaaaatgaa
gatggagaggttcttcaccaagccggcaagcgcctaacaaagaaaaaagccgataaatta
atcgaagatggcgttaaatttgtcgagtatcctatcgaagcacttattggtagatatttg
gcaaaccctgtgataaacacagaaagcggtgaaattttatatgacacactatctgctctt
gatgagaataaacttgcaaaaattttagctgagcatgaaagtatcgacattataaataac
tctgcagccggagttgatgacgctataataaattcatttatcgccgacaatgatatgctc
aaggttttaaaacaaactgagggcgtttatgatgaaaatgaccttgctgctattagaatt
tacaaggtcatgagacctggtgagccggtagttaaagaggccgcaaaaagctttgtaaat
gatatattgtttaaccctgaaagatatgacctaacaaaagttggtcgtatgaagatgaac
cacaagctctcacttgatgtgccagagtatgtcactttgctaactagcgaagatatcatc
aaaactgcaaaatatcttataaaagttaaaaacggacaaggccacattgacgaccgcgac
caccttggcaaccgccgtataagatcgatcggcgagctacttgctagtgagcttcacctt
ggttttgttaagatgcaaaaggctatccgtgataaatttacaagtctaagcaataatact
gacgagatcatgccttatgatcttatcaatccaaaaatgattacagcaacaatcatggaa
tttttcacaggcggccagttaagtcagtttatggatcagacaaacccacttagtgaggtt
acacacaagcgccgtctatctgcacttggcgagggcggcttagtaaaagagcgtgctgga
tttgaggtgcgtgacgttcatccaactcactacggcagaatttgtccggttgagactcca
gaaggtcaaaatatcggtcttataaacactctttcaacttatgcaaaagtaaatgacctt
ggctttgttgaggcgccttataaaaaggttgtcgatggcaaagtgactgacgagatagtc
tatctaacagcgacacaagaagagggtaatgttatcgctccagcatcaactaagcttgat
gaaaatggacatattgttgaggatttgatcgaggttagaaaagagggcgagatgatgctt
gctcgtagagaagatgttaccctgatcgacctttgctctggtatgatagctggtgttgca
gcttcgcttatccctttcctagagcacgacgacgctaaccgtgcgcttatgggctcaaac
atgcagcgtcaagctgtgccactacttcgctcaactgctcctatcgttggaacaggtatg
gagagtgttatcgcaagagatgcttgggagagcgtaaaagcaaaacgaggaggcgtggtt
gaaaaggttgataataaaaacatctttatccttggtgaagatgaagctggtccatatatc
gatcactactctttagagaaaaatttaagaacaaaccaaaatacgacattttcacaacat
ccgatcgttaaaaaaggtgatgagatcgttgctaatcaaattatagctgatggcccaagc
atggaaaaaggcgagctagctatcggtaaaaacgcactaattgcatttatgccttggaat
ggctacaactacgaggacgcgatcgttattagtgaaaaaatgatacgtgaagatgccttt
acaagcgttcatatttatgaaaaagagattgaggctcgtgagctaaaagacggcgttgaa
gagataacaaaagatataccaaacgtcaaagaagaggagcttatgcaccttgatgaaagt
ggtattgttaaaattggtacagagatcaagcctggtatgatccttgttggtaaagtatct
ccaaaaggcgaagttaagccaactccagaagagagattacttcgtgctatctttggtgaa
aaagcaggccatgttgtaaataaatcgctctatgcttctgcttcaatggaaggcgttgtt
gttgatgttaaaattttcactaaaaaaggctatgaaaaagatagcagaacaaacaaggct
tacgaagaagagaagacacttttagaaaaagagcatcatgatagactgcttatgctagac
cgcgaagagatgctaaaagttacagcacttctttctaaaaacccactagctagcgatcaa
gaggtaaataaaaaagagtataaaaaaggctcaaagatcaacaaagctgactttgagaat
atcaatagatttaccctaaatgctatcgtaaagagcttttcaaaagatatccaaaagaaa
tatgatgagctaaaaaattacttccaaaatgagaagaaaaagcttaaagaagagcacgac
gctaagatagaaattttagaaaaagatgacattttaccaagcggtgttgtaaaacttgta
aaagtttatatagctacaaaacgcaaactaaaagttggcgataagatggctggacgtcac
ggtaacaaaggtatcgtttcaaatatagttagagaagtcgatatgccttatcttccaagc
ggtcagatcgtagatatcgtgctaaacccactaggcgttccaagccgtatgaatatcggt
caaattttggagagccaccttggtcttgttggctaccgcttaggcgagcagatcaatgaa
atttttgagaccaaaaaaggcgaatggataaaagagctaagagctaagatgatagagatc
gcaagcgttgctaagctaatggacgctaaaaaagctcttggtaagatgagcgatgagaag
cttcttgagtatgcaaaagattggagcaatggcgtaagatttgcaactccgatttttgaa
ggcgttaaagctgacgaatttgcaaaactatttgagatggcaaagatagatagcgatggt
aaaactgagctatatgacggacgtacaggctcaaagataagagaacgcgttaatgttggt
tgtatgtatatgctaaaacttcaccacttggttgatgaaaaagttcacgcaagaagtact
ggaccatacagtcttgttacacaacaacctgtcggcggtaaggcgctatttggtggtcaa
aggtttggtgagatggaggtttgggcacttgaggcttatggtgctgctcatacactaaga
gagatgctaactgtaaaatcagacgatgttgagggaagactctctgcttacaaagcttta
acaagaggtgaaaacgttcctgagactggtatccctgagacgttctttgttctaacaaac
gagctaaaatcactagctcttgatgtggaagtatatgatgaggatgagacaaatgaaact
aactaa
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