Cyphomyrmex costatus: 108771417
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Entry
108771417 CDS
T11118
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03008
Ribosome biogenesis in eukaryotes
ccoa03013
Nucleocytoplasmic transport
ccoa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108771417
03015 mRNA surveillance pathway
108771417
03008 Ribosome biogenesis in eukaryotes
108771417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108771417
03009 Ribosome biogenesis [BR:
ccoa03009
]
108771417
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108771417
mRNA cycle factors
Stress granule specific factors
108771417
Ribosome biogenesis [BR:
ccoa03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
108771417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
TAP_C
NTF2
LRR_4
LRR_6
LRR_8
UBA_4
UBA_8
Motif
Other DBs
NCBI-GeneID:
108771417
NCBI-ProteinID:
XP_018392198
UniProt:
A0A195CYN4
LinkDB
All DBs
Position
Unknown
AA seq
543 aa
AA seq
DB search
MASPTKSPTASTTTSTTNQASWEPHRITYIKPTFDICEKALANRTDLWHKFIVFDGAVYR
RTDVLRAIVITCEPALLIPIMYTIEDKNKSTFLAKCAINAIENLVKQGLTITLPSGQDLY
IDIVLGFLGANELRVNTNKIIADALQCRYEPMRKIFNLDDFENEKALGSIFCPISIPKIF
DLVLRCSRTSMSIRDPQQSKLAVRELSLRYNKLTAVILFDKFFNYHLTKLDLRHNQILDV
EYLRYFHEFKITELWLDGNPLCTKYTNSQDYIQAVKNVFPYLQILDGIVIGMENKFVPSI
QSYYLGNGTKIPLIRQFVKHFFMLYDQDDRIVMHGLYDKSAFYSMSLGNNITNHIHKEIV
KTFFMNRNWYKISDCAKCHEFLFRGPEKIITALQKQPPTMHYLKTFCIDLLYEEDNYIAV
SVQGLFAYRLSVCPPMMFNRTFIIIRKEDNEYCIINDMCYIDGTAPNDIKEVKYDKKIVP
KFIPTVLSVTEKEQLLRFLRELTTMNIRYCYKYLQNAEWNIKNAITTFMKNYSVNDVPSE
AFQ
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaccaacaaaatcgccgacagcatcaacgacaacgtcaacaaccaatcaagcg
tcatgggagccgcatcggattacgtatatcaagccgactttcgatatatgtgaaaaggca
cttgcaaatcgtacagatctgtggcacaagttcatcgtcttcgacggcgctgtgtatagg
cgaaccgatgtcctgcgcgccattgtaatcacctgtgaaccagcactcctgataccgatc
atgtacaccatcgaggacaagaataagagcacgtttctcgcaaaatgtgccattaacgcc
atagagaatctagtgaagcagggattgactataacgttgcccagcggtcaggatctgtat
atagatattgtattgggatttcttggtgcaaatgagctgcgagtgaatacaaacaaaatc
atagcagatgccctgcagtgtaggtatgagccgatgagaaagatattcaatctggatgac
ttcgagaacgagaaggctttaggctcgatattctgtcctatttccataccaaagattttc
gatctagttttgcgctgcagcaggacaagtatgagcatccgtgaccctcaacaatcgaaa
ctggctgtccgtgaattgagcttgagatacaacaaactcacagctgtcattctgtttgat
aagttcttcaattaccacctgaccaagttggacttgaggcacaatcaaatcttggatgtg
gagtatctacgttatttccatgagttcaaaataactgaactttggttggatggaaatcca
ttgtgtacaaaatataccaactctcaggattatatacaagctgtgaagaatgttttccca
tatttacagatcttagatgggattgtcataggaatggagaataagtttgtaccaagcatc
cagagttattatctaggcaatggaacaaagattcctctgatcaggcaatttgtcaagcat
ttttttatgctgtatgatcaagatgatagaatagttatgcatggcctatatgataaaagt
gcgttctattccatgtcgttaggtaataatataacgaatcatatacataaagagattgtt
aagacattttttatgaatagaaactggtataaaatttctgattgtgccaagtgccatgaa
ttcctatttcgaggacctgaaaaaataatcactgctcttcaaaagcaaccaccaacaatg
cactatcttaaaacgttttgtattgacttgttgtatgaagaagataattatatagctgtt
tctgtgcaaggtctatttgcatatcgactatcagtctgtccacccatgatgtttaacaga
acttttattattatacgaaaagaagacaatgaatattgtattattaatgatatgtgttac
attgatggtacagcccctaatgatattaaggaagtgaaatatgataaaaaaatcgtgccc
aaatttattccaacggtacttagcgtgacagaaaaagagcaactgcttagatttttacgt
gaacttactacgatgaacattcgatactgctacaaatatcttcagaatgcagagtggaat
ataaaaaacgcaattactacttttatgaagaattattcagtcaatgacgttccctcagaa
gcttttcaataa
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