Cyphomyrmex costatus: 108771431
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Entry
108771431 CDS
T11118
Name
(RefSeq) nuclear pore complex protein Nup153
KO
K14296
nuclear pore complex protein Nup153
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03013
Nucleocytoplasmic transport
ccoa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108771431
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108771431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108771431
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108771431
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Zn_ribbon_RanBP
DUF7129
Temptin_C
Motif
Other DBs
NCBI-GeneID:
108771431
NCBI-ProteinID:
XP_018392225
LinkDB
All DBs
Position
Unknown
AA seq
1539 aa
AA seq
DB search
MPREGGNPAGRRPSSRNAKPYDANNSFVRKVATKVTDFIPQSSWISKWFNTSQSNEDALE
GRGNIEETEFKDDVQQPPPSKRPRIRMDMIHPPGTFSIQTRVKTALNTIEPSKEQYPIHN
EMTEDFATAGPSGIGHLRTSTPAVQADIRTVTSHRSDLNSLALTNNGIANGMDDNSESSE
STSGCSSLIPQINRHEGSSNLLYSSMFTSRKRHLDDKLTFTNHLQSPRSLFLDSNSRDSL
SSRRPSFNASIITNAVDRASPLSSPFYSGNITFGGANAVGLYKRSRNIFNNSNEIQLKVP
RRTSVEVKPSDAVGVDSSGMSQTAKKILEALEHFSSPVSDAKKIPLKNTSNAMSSVSRKR
TREEIPNPSARIGLRHLTRELTVPTVPDILKLRRRQKLQDTTLVARKIVSARSDPPPPPQ
EYRLRTEDTDSEKYRGKLKGKSKINLEQEETVAPVNLPNIPLPITTLPNFNFTLPPPASH
SAGKTIANKENSFTFASPIKVTDAGKSLQSVNNFTFSNPINAEDCANNLTDSNSHSLTEK
GFTVDCAKTSAPNFIWSGSSTAPRLKAKVKNVSTMPQELKSGSVMDIFKSSKIEFNLIGQ
ANSGLTSETTHNDKNISLDSDITNMHDTESSWECSECMIRNNSTDKQCTACKMSRLNPND
KTSLPSTSTTDTVEETKSIENDCFGSQFKLSANQWECTTCCVRNKQSNITCVACTTPKSG
SSSAMQQTVKSQNFDLIDKFKPAEGSWECSGCLLRNAANVITCPCCNTSKPTTSVKTKPK
EMTNKESSAQKLNTNTEVTAMKEISNSEIINKFKPSKDSWECPGCLVRNNSSVATCPCCS
TPKPSSVGGPSKAEQTSSNGFGDKFKKPEGSWTCDSCMLQNDAKHMECVACQASKPGIVK
SNKSSTLQFKFGGVSSGITNLTDQPGGFKFGIDKSDNQSKSDTSPLNGFKFGNAQQNSGT
AQFTFGIPKEESKAVNKAAKTNSVTTSSSSSTGFVLNVKSSEKSESTNQNQESKQETLFG
ISKCDSSTIASEKQNTNIVSSAPSTAPSFSFMAGFTFPTKNQRVQSSPKKTSFAITVTES
SKPAPTTDTVPISTNTTLSSLLTQKNITKNTLDAKSEPTFSFGVPSSVSTATTTSTNATT
TCLPTFAQPTFTFSDTKTTSQSTTIPSFSQVPTSSATLSTSVSYGEKTTETTPTNKAANN
IPVATLFPIVSSSTSLFTNESKTTIAFGTDKPSSFTTTGSKPSGFVIPENKANVPTFGSN
TESKPPIFATRETKLAVFNSPTANSLSTFVTPSNSATSTPFGSTNTPAFRNNTSAFGSAT
TTSTIFSTTKPIETNAASNNSLFTFGSASSQQSASGGFNFSANVNPVTSPTKPLFTFGSN
SNTPQNSNNTFSSDTFGANSTPTNANFAFNPPKQETPATFGQGAVATPIFGAPQANPQTP
ATSSFSTTPSSSTGFNFGSTAPIAATSGGFNFGGMSSTSASSEGFNFNSPASTSTVAFDP
NSRPSFNFTKGSAPTAFNAPPQSAAAPRKIKKAFRRCVR
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atgcccagggaaggcggtaatccggccggcaggcggccgtcgtcgcgcaatgcgaagccc
tacgacgcgaacaactcatttgtgagaaaagtggcaaccaaggtaacagattttatacca
cagtcatcatggattagtaagtggttcaatacctctcaaagtaatgaagatgcattagaa
ggtagagggaatattgaagagacagaatttaaggatgatgtgcagcagcctcctcctagc
aaacgaccacgtattcgtatggatatgattcatccacctggcacattttctatacaaaca
agagttaaaactgctttaaatacaattgaaccctctaaagaacaatatcctattcataat
gaaatgacggaagattttgcaacagctggaccaagtggaataggacatttaaggacttcg
actcctgcggtacaagcagacattaggactgtaacgtctcataggtctgacttaaattcg
ttagctttgactaataacggaatagcaaatggaatggatgataattcggaatccagtgaa
agtactagcggatgcagttcgcttattccacagataaataggcatgaaggctcatcaaac
ttgttgtacagttcaatgtttactagtagaaagaggcatcttgatgataaattgacattt
actaatcatttacaatctccaaggtctttgtttttagacagtaattctcgcgattcttta
agcagtcgtagaccgagttttaatgcatcgattataacaaatgctgtagatcgtgcatct
ccgctatcttctcctttttatagtggtaatattactttcggaggtgcaaatgcagtaggt
ctttataaacgaagtcgtaatatttttaacaattcaaatgagatacaacttaaagtacca
aggagaacaagtgttgaagttaaaccttctgatgcagtaggagttgattcatcgggtatg
agtcaaaccgccaaaaagatattggaagcattagaacacttttcttcacctgtatccgac
gcaaaaaaaattccattaaaaaacacaagtaatgctatgtcttcggtaagcaggaaaaga
acgcgagaagagataccgaatccatctgctaggattggtctgcgtcatttgacgcgtgaa
ttaacagtaccaaccgtccctgatatattgaaactaaggcgaagacaaaagctacaagat
acaactcttgtggctagaaagatcgtttccgctcgtagcgatccacctccgcctccgcaa
gaatatcggttaagaacggaggataccgatagtgaaaagtaccgcggaaagttaaagggc
aaatctaaaataaatttagagcaagaagaaacggtggcgccagtaaatttgccgaacata
cctttaccgataacaacgttacctaatttcaattttaccttaccaccccctgcttcacat
tccgcaggcaaaactatagcaaataaagaaaattcttttacatttgctagtcctatcaaa
gtaacagatgctggaaaaagtttgcagtctgtcaacaatttcacttttagtaatccgatc
aacgctgaagactgcgcgaataatttgactgattcaaattcacattcattaaccgagaaa
ggatttactgttgattgtgcgaaaacatccgcaccaaatttcatttggagtggctcatcc
acagcacccagattaaaagcaaaagtaaaaaacgtgtctacaatgccgcaagaattgaaa
tcaggaagtgttatggatattttcaaatctagtaaaatagaatttaatttaattggacaa
gcgaattcgggattgacttctgaaacaacacacaatgataaaaatatcagtttagattct
gatattacaaacatgcacgatacagaatcatcttgggagtgtagcgaatgcatgatcagg
aacaatagtacagacaaacagtgtactgcatgtaaaatgtctcggttaaatcctaatgat
aaaacttcattaccctcaacgtcaacaacagatacagttgaggaaacaaagtcaattgag
aacgattgtttcggatctcagtttaaactatctgcaaatcaatgggagtgtacgacttgc
tgtgtaagaaacaagcaaagtaacatcacgtgtgtagcatgcactacaccaaaatcagga
agtagttctgcgatgcaacaaactgttaagtctcaaaattttgatctaatagataagttt
aaaccagccgaaggatcgtgggaatgctccggttgtttactaagaaatgcagcgaacgtt
attacatgtccttgttgcaatacgtctaaacctactacttctgtaaaaacaaaaccgaag
gaaatgacgaataaagagtcatctgcacagaagttaaacactaatacagaagtcacggca
atgaaagaaatatctaattccgaaataataaacaaatttaaaccaagcaaagattcctgg
gagtgtccaggatgccttgttagaaataacagttctgttgccacctgtccttgttgcagc
acacctaaacctagttctgttggaggaccgagcaaagcggaacagacttcaagtaatggg
tttggagacaaatttaagaaaccagaaggttcgtggacttgcgattcttgcatgctacaa
aatgacgcaaaacatatggaatgtgtagcttgtcaagcttcaaaacctggtattgtaaaa
tcaaacaaatcttctaccttgcaatttaagtttggtggtgtatcgtctggtataacaaac
ttaactgatcaaccaggtggatttaagtttggtatagataaatctgacaatcaatctaaa
tctgacacatctcccttaaacggatttaaatttggtaatgcacaacagaatagtggtacg
gcacaatttacatttggcattccaaaggaagagagtaaagctgtaaataaagcagctaaa
actaatagtgtcactacgtcttcttctagtagtacaggatttgtactcaatgtaaaaagt
tctgaaaaatccgaatctaccaatcaaaaccaagaatctaaacaggaaacactttttggt
atatcaaaatgcgatagttcaacaatagcaagtgagaaacaaaatacaaacattgtgtcc
agtgctccatcgactgctccttcattctcctttatggcaggctttacttttccaaccaag
aatcagcgtgttcaaagttctccaaaaaagacttcctttgcaatcactgtgacagaaagt
tccaaaccagcaccgacaactgatacggtaccaattagtactaatacgacgttatcgtcg
ttattgacacaaaaaaatattacaaagaatacattagacgcaaaatcggaaccgacattc
tcattcggggtaccaagcagtgtaagcactgctactacaacttccacgaatgcaacgact
acttgtcttccaacttttgctcaacctactttcacattttccgatacaaagacgacatct
caatcaactacaataccatcttttagccaagttccgacgtcatctgccacgttatctaca
agcgtgtcgtacggagaaaagacaaccgagactactccaactaataaagccgcaaacaat
ataccggtcgctacgctcttcccgatcgtctcgagttccacatcactgttcaccaatgag
tcgaaaacgacaatagcattcggcacagataaaccgtcgtcattcaccacaacgggcagc
aaaccatcaggatttgtcattcccgagaacaaagctaatgttccaacgttcggcagtaac
accgagagtaaaccaccaatttttgctacacgggaaacgaagttagctgtattcaattca
cctacggcaaactctctatcaacgttcgtcacaccgtctaatagtgctacttcgacacct
tttggatcaactaataccccggcctttagaaataatacatctgcttttggcagtgctacg
acaacatctactatattttcaaccaccaagcccatcgagactaatgctgcatcaaacaac
tctttattcacgttcggctcggcttcatcgcaacagtcagcaagcggcggatttaacttc
tctgcaaatgttaatccggttacgtcacctacgaagccgctctttacgtttggtagtaat
tcaaatacgccacagaatagtaataacacattcagtagtgatacatttggagctaattcc
actccaacaaacgccaattttgcgtttaatccacctaaacaagaaacaccggcgacattt
ggtcaaggcgcagtggcaactccaatattcggtgctccacaagcaaacccacaaactcca
gcaacatcatcgttctcgactactccttcatccagtacaggattcaattttggatctaca
gctccaattgctgcgacatcaggaggttttaactttggaggaatgtcatctacatctgcg
tcatccgaaggattcaactttaattctcctgcttctacttccacagtagcgttcgatccc
aatagtcggccttcgttcaatttcaccaaaggaagtgcgccaacggcatttaacgctcca
ccccaatcggcagcagctccacggaaaatcaaaaaagcatttcgaagatgcgtgcgatag
DBGET
integrated database retrieval system
