Cyphomyrmex costatus: 108771511
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Entry
108771511 CDS
T11118
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108771511
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccoa00536
]
108771511
Glycosaminoglycan binding proteins [BR:
ccoa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108771511
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Apis_Csd
Motif
Other DBs
NCBI-GeneID:
108771511
NCBI-ProteinID:
XP_018392324
LinkDB
All DBs
Position
Unknown
AA seq
1495 aa
AA seq
DB search
MRRQALELITRLLVVQLLLPLPDQVNAVKNRLRKQRSKPQEHQVQHSSNDYEYDYNYNEN
YDEYDEKNETTTISPSRAIPPDITQFSERSEITTEAFLRRETPTDLPALMTTQFYDHSRN
LEEPSSTSARDHSVSPTEILPGESNIYSSVAVPGPRGVPGRPGDAGRPGDSGYPGQPGTP
GIPGPPGPPGPVPDVSLYYQQLALSEANEDKGPTGAAASLYGPEALSYIQTQVGPMGPRG
PPGPAGPPGPQGFQGTRGETGELGSPGPPGMPGPRGLPGLPGKDGISGEDGETGPPGSPG
SVGQRGIPGIPGLPGLKGHRGFPGLDGAKGEQGIPGEKGSMGSPGSTGPVGPMGPAGPRG
ERGREGPSGPPGLRGLDGIAGPPGQPGAIGKPGSPGFPGNPGVKGDQGSQGPTGNQGLQG
PRGESGRPGQPGETGPQGPQGIDGIPGEKGATGAIGPVGVIGFPGARGQPGISGNPGIPG
AKGAPGFPGDRGLKGDTGVKGDAGMPGPRGLPGPPGNEGKRGKRGMRGPIGSVGSPGERG
IPGERGLPGSDGPIGPQGQPGDRGPSGAVGPKGATGDPGRPGSTGLQGARGLMGRPGVSG
KPGNPGERGIQGADGKPGEQGLPGQQGLPGPIGTPGERGYPGERGKDGEPGNPGSPGPRG
DSGKEGPPGVQGLPGPSGSDGARGLPGPTGPRGFQGLPGAAGNPGVPGKDGEAGVQGPPG
PPGIVGDRGERGLPGEIGLTGPPGSMGPRGETGAQGSEGLIGLPGLKGDKGSFGSPGLLG
LPGARGLPGESGQKGERGTIGPIGPEGPSGHIGERGPQGEVGPPGPPGEPAERGDPGSPG
PIGEPGAPGNPGERGPHGLQGLPGFPGPQGLIGLPGLKGDHGYPGLKGEQGNPGLTGNRG
EIGAPGPIGLTGAKGIRGDPGVRGEPGLMGPPGIIGHVGPSGPPGNVGPSGVPGLPGIKG
DAGDIGRPGNPGPIGNPGLPGIDGIKGESGSPGSQGPTGSQGPQGLPGERGLSGLPGSPG
PIGNRGLRGAPGEVGQPGKTGAEGPPGPPGLTGPAGAPGHIGETGPEGSIGKPGPSGIGG
RPGDKGPPGTPGAAGPSGPPGLPGPLGPTGPTGPTGERGPKGEAGPQGVEGPQGPRGKPG
PAGLEGIKGARGEEGQKGAKGHRGFTGLQGLSGSPGLVGEKGIPGLPGLPGKDGEPGIRG
NPGREGNPGPIGPAGNPGSRGPSGEEGQQGSPGLPGPPGPPGPPGEVGFGYDAASLAAFI
AQGQTKGPDPLGDEPPRIFSKDITEKERRELLLKAYENLKSSFQKLVKPDGEKNSPAKTC
RDLFAAYPDKLSVYCDVEKRATCILPNPSRSSEINHITDQQETWLSEIDSGMKITYKADS
NQISFLQLLSKHAKQNITYHCKNSVAYFDYEKKTYKRSLKLLTWNDVELTPRGNQRLRYE
MIMDECRVYRNHWGKTVVSYETDKPIRLPILDVALRDIGKPEQSFSIEIGPTCYD
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgagacggcaggctttagagctgatcacgagacttctcgtggtccagctgctgttgcct
ttgccggatcaagtgaacgctgtgaaaaacagattgagaaaacaacgatccaagccgcaa
gagcatcaagttcagcattctagcaacgattatgaatatgactataactataatgagaac
tacgacgaatacgatgaaaagaatgagactacaacaatatcaccatcacgtgcaatacca
ccagatattacgcaattttcggagagatccgaaataacaacagaagctttcttgcggcga
gaaacacctacagacttaccagctcttatgacaactcaattttatgatcatagtagaaat
ttagaggagcctagttctacttctgctcgggatcattcagtttcacctacggagatttta
ccgggtgaaagtaacatatatagttcggtggctgtaccaggaccacgaggtgtacctggt
cgacctggagatgctggtcgtcctggtgattcaggatatcctggacaacccggtacacct
gggattccagggccacctggaccaccaggacctgtacctgatgtatctctttattatcaa
caattggctttgtctgaagcaaatgaagataaaggtccgaccggtgcagcggcgtcattg
tatggaccagaggcattgtcttatattcagacacaagtaggcccgatgggtccacgaggt
ccaccaggtccagctggtcctcctggtcctcaaggttttcaaggtacacgaggtgaaacc
ggtgaactgggttctccaggccctcctggtatgccaggtcctagaggcttaccaggatta
cccggaaaagacggtatcagtggagaagatggcgagactggtccaccaggatcgcctggt
tctgtgggacaacgtggcattccaggaatacctgggcttccaggactgaaaggtcatcgt
ggttttccaggtctagatggtgctaaaggtgagcaaggaattcctggtgaaaaaggatct
atgggctcgcctgggtcaacgggaccagtaggaccgatgggtccagcaggacctcgcggt
gaaagaggtagagaaggcccatcgggtcctcctgggttgagaggcctcgacggaattgct
gggccgcctggacaacctggtgctataggtaaacctggctcaccaggttttccaggcaat
cctggagttaaaggtgaccagggatcacaaggaccgacaggaaatcagggtttgcaaggt
ccgcgaggcgaaagtggccgtccaggacaacctggtgaaactggtccacaaggtcctcaa
ggcatagatgggattccgggtgagaagggagccactggagcaataggacccgttggtgtg
atcgggtttccaggtgctcgaggtcaacctggaatatcgggtaatcctggtatccctggc
gccaaaggagcacctggctttcctggtgatagaggtttgaaaggagatactggagtgaaa
ggtgatgcaggaatgcctggcccgcgtggacttcctggacctcctgggaatgagggcaaa
agaggcaaaaggggtatgcgtggaccaatcggctctgtaggatctcctggagaacgcggc
atacctggagagcgcggtcttcctggatcggatggtcctatcggtcctcaaggacaacct
ggtgatcgtggtccttcgggagctgttggaccaaaaggcgctactggagatcctggacga
cctggatcaacaggattacagggtgcacgtggtttaatgggtaggcctggagtttccggg
aaaccaggtaatcctggagaacgtggaattcaaggtgcggatggcaagccgggagaacaa
ggactgcctggacagcagggattaccaggaccaataggaacaccaggggaaagaggatat
cctggagaacgtgggaaagatggtgagcctggtaatccaggttcgcctggtccaagagga
gatagcggtaaagaaggacctccaggagtacagggtttaccaggtccatcaggaagcgac
ggtgcgcgaggtcttccggggcctactggtcccagaggttttcaaggtcttccaggcgcc
gccggtaatccgggtgttccaggcaaggacggagaagcaggagtacaaggacctcctggt
ccaccgggaattgttggcgatagaggcgagcgaggacttccgggagaaataggacttact
ggacctccaggatctatgggtcctagaggagaaaccggagcacaaggctctgagggtctc
attggtttaccaggactcaaaggagacaaaggaagttttggttcaccgggattattggga
cttcctggcgcaagaggattacccggagaatctggacaaaaaggagaaaggggcacaatt
ggaccaatcggtcccgaaggtccatcaggacatattggagagcgtggtccacaaggagaa
gttggacctcctggtcctcctggagaaccagctgaacgaggtgatccaggttctcctggg
ccaattggcgaacccggagctcctggtaatccaggagaaagaggacctcatggattacag
ggcttgccaggtttcccaggcccacaagggttaattggacttccgggtctgaaaggtgat
cacggatatccgggtttaaagggagaacaaggaaacccgggactaactggcaatcgcggc
gaaatcggagcacctgggcctattggacttactggtgctaagggaatcagaggtgatcct
ggtgtacgaggtgaacctggtttaatgggcccacctggtatcataggacatgttggacca
tcaggaccacctgggaatgtaggaccatctggtgtccccggattgcctggtatcaaaggt
gatgcgggcgatattggacgtcctggaaatccaggtccaatcggtaatcctggtttacca
ggaatcgatggaattaaaggcgaaagtggatccccaggttctcaaggaccgacaggttct
caaggacctcaaggtctgcctggcgaaagaggtttatcaggtctacctggttcccctggt
cctataggaaatagagggttacgcggagctcccggtgaagtaggacaacctggaaaaaca
ggagcggaaggcccacccggacctcctggattaacaggtcctgcgggtgctccaggtcat
ataggagaaacaggaccggaagggtcaattggaaaaccaggaccatcgggtataggaggc
cgaccaggtgacaagggaccacctggaacacctggtgcagcagggccatcaggtcctcct
ggattaccaggaccacttggaccgaccggacctaccggacctactggagaacgtggtcca
aaaggtgaagcaggaccgcaaggtgtggaaggtccacagggaccacgaggaaaacccggt
ccagcgggtctggaaggtataaaaggagctcgcggagaagaaggacagaaaggagctaaa
ggacatcggggatttactggtttacaaggattatctgggtctcctggtttagtaggagaa
aaaggtatacctggtcttccaggacttcccggtaaagatggagaaccaggtattagaggt
aatcctggacgagaaggtaacccaggtcctatcggacctgcgggaaatcctggatcaaga
ggtccatctggagaagaaggtcagcaaggatcaccaggtcttccaggacctcctggacca
cctggtcctcctggtgaagtgggttttggttatgatgccgcatctttagcagcatttata
gcacaaggccaaactaaaggaccagatccacttggagatgaaccaccaagaatatttagt
aaagatatcactgaaaaggaacgaagagaattgcttttgaaagcgtacgaaaatttaaaa
tcgtcgttccaaaaattagtaaaaccagatggtgaaaagaattcgcctgctaaaacttgt
cgagatctatttgctgcttacccagacaaattatctgtgtattgcgatgttgagaaacgt
gcaacttgcattttaccaaatccatcacgttcatcagaaattaatcacattactgatcaa
caggaaacctggttaagcgagatagatagcggcatgaagattacatacaaggcagatagt
aatcaaattagtttcttacaattgctttcaaaacatgcaaaacagaacatcacgtatcat
tgtaaaaatagtgtagcttattttgattacgaaaagaaaacgtacaaaagaagtttgaag
cttctgacttggaacgatgttgaattgacaccacgaggcaatcagcgtcttagatacgaa
atgataatggatgaatgcagagtctatcgaaatcattggggtaaaactgttgtctcatac
gaaacagacaaacccataagacttcctatattagatgtggctctgcgagatatcggaaaa
cctgaacagagtttttctattgagataggtccaacttgttatgattaa
DBGET
integrated database retrieval system
