Cyphomyrmex costatus: 108771524 Help Entry 108771524         CDS       T11118                                  Name (RefSeq) protein CLP1 homolog   KO K14399   polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] Organism ccoa  Cyphomyrmex costatus Pathway ccoa03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:ccoa00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     108771524  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccoa03019]     108771524 Enzymes [BR:ccoa01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.1  Phosphotransferases with an alcohol group as acceptor     2.7.1.78  polynucleotide 5'-hydroxyl-kinase      108771524 Messenger RNA biogenesis [BR:ccoa03019]  Eukaryotic type   mRNA processing factors    3' end processing     Pre-mRNA cleavage factor IIm (CFIIm)      108771524 SSDB OrthologParalogGFIT Motif Pfam:  CLP1_P Clp1 CLP1_N CbiA MMR_HSR1 ATP_bind_1 nSTAND3 AAA_18 AAA_16 AAA_22 CTV_P13 TniB DUF8551 AAA_29 Motif Other DBs NCBI-GeneID:  108771524 NCBI-ProteinID:  XP_018392339 LinkDB All DBs Position Unknown AA seq 422 aa AA seqDB search MADEKSVVQEFKLDPDCELRFEMESKNEKVTLELKNGLAEVFGTELVKGKKYEFTAGAKV AVFTWQGCTVELVGKTDVSYVAKETPMGLYLNCHAAMERMRETAEKDDTRGPITMIVGPC DVGKSTLCRILLNYAVRMGRRPIFVDLDVGQGHIAIPGTVGALLVERPSNIVEGFSQQAP LVFHFGHKTPQTNVTLYNLLVTRLAEVCSDRLQANKKAKASGIVINTCGWIKGDGYKLLT HAAQAFEVDAILVLDQERLYNELVRDMPDFVKVVFLPKSGGVVERSQAQRSEARDQSVRE YFYGSRTPLYPHSFEVKWNEARLYKIGAPVLPASCMPLGMKAEDNLTKLVAVTPGPSLLH HLLSVSFADSPEDDVVQTNVAGFVCVTNVDVERQTFTVLSPQPRPLPNTVLLLSDIQFMD SH NT seq 1269 nt NT seq  +upstreamnt  +downstreamnt atggccgatgaaaaatctgtagtgcaagaatttaaattggatccggattgcgaattaagg ttcgaaatggaaagcaaaaatgaaaaggttacattggagttaaaaaatggcttggcagaa gtttttgggacagaattagtaaaaggaaaaaaatatgagtttactgctggtgcaaaagtt gcagtttttacttggcagggctgtactgttgaattagttgggaaaacagacgtcagctat gtagcaaaggagactcctatgggtctgtatttaaattgtcatgcagcaatggaacggatg agagagacagcagagaaagatgatactagaggtccaataacaatgatagtaggaccttgt gatgtaggaaaatctacactttgtagaatattattgaactatgctgttagaatgggcaga agaccaatttttgttgatcttgatgttggtcagggacatatagcgattcctggcactgtg ggtgctttattggtagaacgaccatccaatatagtagaaggtttcagccagcaagctcca ctggtcttccattttggacacaaaacgccacaaaccaatgtaacgctgtataacttactt gtaacacgtttagcagaggtctgttcagatagattacaagctaacaaaaaagccaaagca tcagggattgttataaatacgtgcggctggatcaaaggagatggttacaaattgctcaca catgctgctcaagcatttgaagtggatgcgattcttgtattggatcaggagagactctac aatgaattggtgagagatatgccagactttgtgaaggtagtctttttaccaaagagtggt ggagttgtagagagaagccaagcacaaagaagtgaagcaagagatcagagtgttagagaa tatttctatggttcaaggacaccactgtatccacatagttttgaggtaaaatggaacgaa gctagattgtacaaaattggagctcctgttctaccagcatcttgcatgccattgggtatg aaggcagaagacaacctgacaaaattggtggctgttacaccaggacccagtttactgcat catttgctatctgtttccttcgccgattctcctgaggatgacgtcgtacagactaatgta gctggatttgtttgtgtgactaacgtagacgtcgagaggcagacatttacagtacttagc ccgcaacctagaccattaccgaatacagtattgttattgtcagatatacaatttatggac agccattag

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