Cyphomyrmex costatus: 108771592 Help Entry 108771592         CDS       T11118                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism ccoa  Cyphomyrmex costatus Pathway ccoa03040   Spliceosome Brite KEGG Orthology (KO) [BR:ccoa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     108771592  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccoa03019]     108771592    03041 Spliceosome [BR:ccoa03041]     108771592 Messenger RNA biogenesis [BR:ccoa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      108771592 Spliceosome [BR:ccoa03041]  Complex B   Other components    Prp19-related factors     108771592  Complex C     108771592 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_2 TPR_8 TPR_15 TPR_12 ARM_TT21_C PPR TPR_10 Mad3_BUB1_I DHR-2_Lobe_A Motif Other DBs NCBI-GeneID:  108771592 NCBI-ProteinID:  XP_018392416 LinkDB All DBs Position Unknown AA seq 843 aa AA seqDB search MLERKDNEGNVYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTSSKNLNVVYERALKE LPGSYKLWYNYLRQRVNQLKGRCIIDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEE CYITRTRQVFDRSLRALPITQHHRIWPLYIHFLKRHNVYETAVRVFRRYLKLAPEDTEEY IEYLISIERLDEAAIKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE ELSLKKLIEEAARNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRV KLYEGQPHEIINTYTEAVQTVQPQLAVGKLYTLWVAFGKFYEENRQIEDARVVFEKATHV PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKSL KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLEE EHGLARHAMSVYERATNAVLPEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML RIKRSVQAMYNTQVNMMSAQMLNNTSNQISDVTLDAMRLLDSKITSSADNVADVKGVIKF VRGVTEKDGRPESHVNNPDEIDIDIDDENDNNVEIEEDVLIEKQTIPSQVFGSLKAVQKE EED NT seq 2532 nt NT seq  +upstreamnt  +downstreamnt atgttggagcgtaaagataacgaaggaaatgtttatgcctttaatgaggaggatttacca tatgaagaagaaattttacgaaatccatattcagtcaaacattggcaacggtatattgat catcttaaaaacacaagcagtaagaatttaaatgtggtatacgaacgagcattaaaagaa cttccgggcagttacaagctatggtataattatcttcgacaacgtgtgaatcaactaaaa ggtcggtgtataatagatccattgtacgaagatgttaataatgcatttgaacgagcttta gtatttatgcataaaatgccacgtatatggatggattattgtaccttaatgactgaagaa tgttatattacacgaacacgtcaagtgtttgatcggtctcttagagcacttcctattacg cagcatcatcgtatatggccattatatattcatttcttaaagagacataatgtatatgag actgctgttagagtctttagaagatacttaaagctagcaccagaagatacagaagaatat atagaatatttaatatccattgaaaggctcgatgaggctgctataaaacttgcacagatc gtcaaccaagacgattttgtatcaaagcatggaaaatctaatcatcaactatggaatgaa ttatgcgatttaatatcaaaaaatccttctaagataaagtctttgaatgtagatgctatt attagaggcggtttaagacgttatacagatcaattgggacctttatggaattcgttagca gattattatgtacgaagtggtctctttgaaagggcgagggatatttatgaagaagctata cagacagttaccactgtcagagattttacacaagttttcgacgcttatgcacagtttgaa gaacttagtcttaaaaaacttatagaagaagcagcaagaaatcctactgaagaagatgac ataaagttagaattaagactggcgcgattggaacatcttatggaaaggagattattgtta ctcaattctgtgttgttacgacaaaatccacacaatgtagcggaatggcataaaagagta aaactttatgaagggcaaccgcatgagataattaatacatatacagaagcagttcagaca gtacaaccacagttagcagttggtaaattgtacacattgtgggttgcgtttggcaaattt tatgaggaaaataggcaaatagaagatgctagagtggtatttgaaaaagcaactcatgta ccatataccaaagtagacgatcttgcttcagtatggtgtgaatgggcagaaatggaaatt agacatggcaactgcaaagaagctttgaaactcatgcatcgtgctactacaatgccagct aggaaagtagcatatcatgatgaaacagaaacagtacaaatgagattatacaaatcttta aaggtatggtctatgtatgcagatttggaagaaagtttcggtacatttaagacctgtaaa gcagtatacgacaaaataatcgatttgaaaatcgcaactcctcaaattatcatcaattat ggattgtttttggaggaaaataattactttgaggaagcgtttagggcatatgaaaaaggt attgcactgtttaagtggcctaatgtttatgacatttggaatacatacctcacaaaattt ttaaaacgttacggcggtacaaaactggaacgtacaagagatctgtttgagcaatgttta gaatattgtccaccaaagtacgccaaagccttatatttgttgtacgctaagctagaagag gaacatggtttagcaagacatgccatgtctgtatatgaacgtgcaacgaatgctgtcctc ccagaagaaaaattcgacatgttcaatatatatataaagaaagctgcagatatatatggt gtgccaaaaactcggcaaatatacgaaaaagctatagaagttttgaatgatgagaacacc agagaaatgtgtttacgatttgctgaaatggaaaccaaattaggagaagtagatagagcg agagcgatatacgcacattgtagccaaatatgtgatccaagggtcacctccaacttttgg caaatttggaaagaatttgaagttagacatggaaatgaggatacaatgcgtgaaatgctt cgaattaaacgtagcgtgcaagctatgtataatactcaagtaaacatgatgtctgcacaa atgttgaataacacatccaaccaaatatcagatgttacgttggatgctatgcgtttatta gatagtaaaattacatcaagtgcagacaatgttgctgatgtcaaaggagttattaaattt gtacgtggtgtaacagaaaaggatgggagaccagaatcccatgtgaataatccagatgag attgatattgacatagatgacgaaaatgataataatgtagaaatagaagaagatgtactg attgagaaacaaactataccatcacaagtatttggtagtttaaaagcagtccaaaaagaa gaagaggattga

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