Cyphomyrmex costatus: 108771994
Help
Entry
108771994 CDS
T11118
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
ccoa Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccoa04147
]
108771994
00535 Proteoglycans [BR:
ccoa00535
]
108771994
00536 Glycosaminoglycan binding proteins [BR:
ccoa00536
]
108771994
Exosome [BR:
ccoa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108771994
Proteoglycans [BR:
ccoa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108771994
Glycosaminoglycan binding proteins [BR:
ccoa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108771994
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
108771994
NCBI-ProteinID:
XP_018392926
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MKIPQGPPGQKGDPGTCTCNATALMSSFTMPKMIQGPKGEPGVPGQEGKQGLMGLTGAAG
PPGERGLHGPSGAKGDKGDIGIAGPEGSQGQKGEPGRDGIPGEKGAQGPPGPPGKGEFSG
YDPEGITMRPGLPGQKGEPGISGNPGPKGEAGIPGSKGVKGEPGYKGVKGDHGKDGPRGI
QGFKGEPGAPGAPGLPGAPGENGRPAEKGDKGDTGPEGKLGPPGPPGPPGVSGPGGINVG
DLGFGSKGDKGDSGARGYKGDKGTKGEKGTKGDAGPAGIPGINGIQGPQGDKGEPGKDGV
SGLPGIPGAKGERGERGPPGATTVANSGDYITIKGEKGAEGKRGRRGRPGPPGPVGPPGK
PGNTGEIGLPGWMGRPGTPGIPGSIGPMGPKGEKGEPGAPSPYGVSVGIKGDKGDDGFPG
IPGQPGREGQRGPPGPPGSPGIPSKGNYYPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRS
HVFGERDYYPSRQGARSSLDELKALRELKQLKELKEQLGVVTAATRGPLESTTKIVPGAV
TFQNTEAMTKMSSVSPVGTLAYIIDEQALLVRVNNGWQYIALGSLLPITTPAPPTTSPPP
ANPPFEASNLINQIPVKADGTGLRMAALNEPFTGDMHGIRGADYACYRQARRAGLRGTFR
AFLSSRVQNVDSIVRLGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNI
LTDFAWPEKVAWHGSHKLGDRAMDTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNK
FALLCIEVTSELVRRRRDADNRLDDDVEMSENDYMEYLEEFMQY
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgaagataccacagggaccacctggtcagaagggagaccccggcacttgcacctgcaac
gccacggccttaatgtcttcctttacgatgccaaagatgatacaagggccgaagggtgag
ccaggagtacccggacaggagggcaagcagggcttaatgggtctcacgggtgcggcagga
ccgccaggagaaagaggacttcatggtccatccggggctaaaggtgacaagggtgatatt
ggaatagcgggaccggaaggttctcaaggtcaaaagggcgaaccgggtcgagatggaata
cccggtgaaaagggtgctcaaggtccgccggggccgcctggaaaaggagaattttctggc
tatgacccggaaggtatcacaatgagaccaggacttcccggacaaaaaggtgaaccaggc
atttcaggaaatcctggccctaaaggcgaagctggaataccaggatccaaaggtgtcaaa
ggcgaacctggatataaaggtgtcaagggcgatcatgggaaagatggtcccagaggaatt
cagggtttcaaaggtgaacctggcgcacccggtgcacctggattacccggcgcacctgga
gaaaacgggcgaccggcggaaaaaggtgataaaggcgatacaggacctgaaggaaaacta
ggacctccaggaccacccggtccacccggggttagcggtcccggtggtataaacgtggga
gatctaggatttggctcaaaaggggataagggcgacagtggagcgcgcggatacaagggt
gataagggcacaaagggcgagaagggtactaagggtgacgccggaccagctggtattccc
ggaataaacggtattcaagggcctcaaggagataaaggcgaacctggtaaagacggagta
tcaggattacccggcatacctggcgctaaaggcgaaagaggtgagagaggtcctcctgga
gccactaccgtcgccaattccggagactatatcaccatcaaaggtgagaaaggcgctgaa
ggaaaacggggtagaagaggacgacctggaccgcctggtcccgtgggtcctcccggaaag
ccaggaaatacgggagaaatcggtctaccaggatggatgggtcgtcctggaactcctgga
attccgggaagtatcggaccaatgggacccaagggagaaaaaggggaacctggcgcaccg
agtccttacggtgtttctgtcggtatcaaaggcgacaaaggagatgacggttttcccgga
attcctggacagccgggaagagagggccaaagaggacctccaggacctcccggatctcct
ggaataccatctaaaggaaactattatccagttccaggacctccgggtcctcccggacct
cctggtccacctggcttgtctttaatcggacagaaaggagaacccgggatcggtagaagt
cacgttttcggcgaaagagattactacccctctaggcaaggagccagaagtagtctagac
gaattgaaagctctacgtgaactcaagcaactgaaagaactgaaagagcaattaggtgtt
gttactgccgctacaaggggacctttagaaagtacaacgaaaattgtgccaggagctgtt
acgttccaaaacacagaagctatgacaaaaatgtctagtgttagtccagttgggactttg
gcttatatcatagacgaacaagctttactagtcagagttaataatggatggcaatacatt
gcactcggatcacttttgcctattacaacgccagcaccaccaacgacatcaccaccgcca
gcaaaccctccttttgaagcatccaacttaattaaccaaatacccgtgaaagccgacgga
acaggattgagaatggctgcgttgaatgagccgtttaccggagatatgcatggtatacga
ggagcagactacgcttgttatcgacaagcaaggcgagcaggcttgagaggtaccttccgc
gctttcctcagttctcgagttcaaaatgtcgatagtattgtcagattaggagatcgagat
cttcctatagttaacataaagggcgacgtgctattcaactcttggaaagagatgttcaat
ggaaatggggcatatttctctcagaatcccagaatctacagcttcaatggaaagaatatt
ctcactgacttcgcatggcccgagaaagttgcgtggcatggctctcacaaactcggtgat
cgagccatggacacttattgcgacgcctggcactcgagcagttcggatcgttatggacta
ggctcgccgttgaccggcggtcgactgttagaacaagtacgatactcgtgcgacaataaa
ttcgcgctgctctgcattgaggtgacgagcgagttggtgaggagacgacgagatgccgac
aatcggctagacgacgacgtcgagatgtcggagaacgattatatggaatacttggaggaa
tttatgcaatactga
DBGET
integrated database retrieval system
