Cyphomyrmex costatus: 108772514
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Entry
108772514 CDS
T11118
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03013
Nucleocytoplasmic transport
ccoa03015
mRNA surveillance pathway
ccoa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108772514
09122 Translation
03013 Nucleocytoplasmic transport
108772514
03015 mRNA surveillance pathway
108772514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108772514
03041 Spliceosome [BR:
ccoa03041
]
108772514
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108772514
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108772514
Spliceosome [BR:
ccoa03041
]
Complex C
Other components
EJC/TREX
108772514
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108772514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108772514
NCBI-ProteinID:
XP_018393550
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDVPSKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEMLKTVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaatgatgatcttttggattatgaagacgaagaacagactgagcaggtagtt
gatggaagcggagatgttccatcaaagaaagaagtcaagggtacatacgtctctatccac
agcagtggatttagagatttccttttgaagccagaaattcttcgtgctattgtcgattgt
ggctttgaacatccatctgaagtgcaacatgaatgtattcctcaagcagttcttggcatg
gatatactgtgccaagcaaaatcgggtatgggaaaaacagctgtatttgtattagctact
cttcaacagctggaattaacagaaaatcaagtctatgtcctagtaatgtgtcacactcga
gaactggcttttcaaatcagtaaagaatatgagaggtttagcaaatacatgccacatgtg
aaggttggcgtatttttcggtggtttacctattcagaaagatgaagaaatgttgaagact
gtatgcccacatattgttgtcggcacccctggtcgtattcttgctctcgtacggaacaag
aaactgaatctaaagcacttgaaacattttattcttgatgaatgcgacaaaatgcttgaa
ttattagatatgcgccgggacgtacaggaaatatttaggagcacaccgcacagcaaacaa
gtcatgatgttcagtgccacgctgtccaaggagatacgtcctgtctgcaaaaaatttatg
caagatcccatggaagtctatgtcgatgacgaggcgaagctcactttgaacggtctgcag
caacattacgttaagttgaaggagaacgagaagaacaagaagttgtttgaactacttgat
gttcttgagtttaatcaggtagtcatatttgtgaagtctgtacaaagatgtatggcttta
gcacaacttttaacggaacagaattttcctgcgattgggatccatcggggcatgacgcaa
gaagagcggttatccagataccaacagttcaaagattttcagaaacgtattttggtggca
acaaatctgtttggacgtggtatggatatagaacgtgtgaacattgtattcaattatgac
atgccagaagattccgatacatatttgcatagagttgcgcgtgctggtcgttttggtaca
aagggtcttgccattacattagtaagcgatgaaagcgatgcaaagatattgaatgatgtt
caagaaaggtttgacgtaaatattacagaattaccggacgaaatcgatctcgcttcatac
attgagggacgatga
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