Cyphomyrmex costatus: 108772936
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Entry
108772936 CDS
T11118
Name
(RefSeq) transcription factor SOX-2 isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ccoa Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccoa03000
]
108772936
Transcription factors [BR:
ccoa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108772936
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
TFIIA
Motif
Other DBs
NCBI-GeneID:
108772936
NCBI-ProteinID:
XP_018394108
LinkDB
All DBs
Position
Unknown
AA seq
516 aa
AA seq
DB search
MHTMETDMKGGSLHAQMPPHPHQGVSPMGHHTGMSPYGSLGSIVHSSALSGSPPSAGGLG
LGLQHHHQTSQHHYAMSAAAVAAAAVQQQQQQQQQQSMHAMVVQQSAQQQQHHAHQQPQQ
QQSQSQQHHQANNHSNPNNPNNPSNSSNAKNNNMDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKLLSEGEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLIKKDK
FQLGGAVAGVGGMLGVDQRQVGTSGGPQQPQLSRDVYQMPNGYMPNGYMMHDPTTYQQHV
AYSSHMGGAATAASAVAYPRYDSMGHHIGGSSPSPINMNGYGGYGGYGGTTVPGGSPSPY
HQAQTGSQISSSHSPSGSSIKSEPTSPASGGIHTPTPTGGPTPTGAAGPAGQVKREYMGQ
QQTSQQASQGDLRQMISMYLPQGIEQGVVQHGGSVYPPGPSPDSLTQHHTTMQPITHMSD
SDRKMLNPETGCYSESVRAWDWNATGNVRVQESWPT
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgcacacgatggagacggacatgaagggcggcagtctgcatgctcagatgccaccgcat
ccacaccagggtgtatcaccgatgggccatcatactgggatgtctccttacggatcttta
ggctcgatagttcatagctccgcgctgtcggggagcccacccagcgcgggtggcttgggc
ctcggtcttcaacatcatcatcaaacttctcaacatcattacgcaatgtcagctgccgcc
gtcgccgccgcggccgtgcaacagcagcagcaacaacagcaacagcagagcatgcacgca
atggtagttcaacagagcgctcagcaacagcaacatcatgctcatcagcaaccacaacag
caacagtcgcagtcacagcagcatcatcaagctaataatcatagcaatccaaataatcct
aacaaccccagcaattcttccaacgccaagaataacaacatggatcgcgtaaagaggcca
atgaatgcattcatggtatggtcgcgtgggcaacggcgcaagatggctcaagaaaatccg
aaaatgcataattccgaaatatcgaaacgccttggtgccgaatggaaacttctcagcgaa
ggagagaagcgtccgtttattgacgaggcgaagcggctgcgcgccgttcatatgaaagaa
catcccgattacaagtatcggccacgtcgcaagacaaagacgctcataaagaaagacaag
tttcagctcggcggagcagtcgccggcgtcggtggaatgctcggtgtggatcaacggcaa
gtaggtaccagcggaggaccgcagcagccgcaattatcgcgagacgtatatcagatgccc
aacgggtacatgcccaacggttacatgatgcatgatccaacaacgtatcagcaacacgtc
gcgtacagcagtcacatgggtggtgctgcaacagctgcctcggctgtggcctatcctagg
tacgattccatgggacatcacatcggtggcagcagtcctagtcctatcaatatgaacggc
tatggcggatacggtggatacggcggtaccactgtacccggtggatcaccatcaccttat
catcaggctcagacgggttctcagatatccagtagtcatagtcctagtggcagcagcata
aagtccgagcctacgagcccagcgagcggtggcatacatacaccgacgccgacgggcggc
ccgacgccgacgggcgcggctggtcctgccggccaggtcaagagggaatacatggggcag
cagcaaacgagccaacaggcatcgcaaggagatctccggcagatgatctctatgtatttg
ccgcaaggcatcgagcagggagtcgtgcaacacggtggaagcgtctacccaccgggtcca
tcacctgactcattgacgcaacatcatacaaccatgcagccgattacacacatgtcagat
agcgatcgtaaaatgttaaaccccgaaactggctgctactccgaatccgtacgagcatgg
gattggaacgcgacgggcaacgtacgcgtgcaggaatcctggccgacgtga
DBGET
integrated database retrieval system
