Cyphomyrmex costatus: 108774543
Help
Entry
108774543 CDS
T11118
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108774543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108774543
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108774543
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108774543
mRNA degradation factors
3'-5' decay
Ski complex
108774543
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
ATPase_2
DUF3516
Motif
Other DBs
NCBI-GeneID:
108774543
NCBI-ProteinID:
XP_018396182
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MAKSTQLFAGPPPIWPDIKSELLKYIECPERLPIHQLDSTQCYWPRKADVLSLLEFDLAP
VNTTLKFDRDPTTGKIGEIQEIELQGAGETARNSMSMTRAPGLLTDGVRGNPSNIPFWPG
GFEEPKVPKSEDIDDIDFEKDLRTLAKGFSSGLEFKSDNCTPINCIRYEVEASTLEETEK
LIINNDNINLMAVIHEEGNLLGSWSSVEEPKKENVQAVDSNIPFMDNSILPKETDIPILK
ISETQTELTKAEWAEQLDVSAPVTDFNKRIPDPAITFSYELDTFQKQAILKLEENCNVFV
AAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFKRKFESVGLLTGDLQIN
QTASCLIMTTEILQSMLYCASDVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQNINI
VMLSATVPNPIIFADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDKFLVLDSN
SQFLLDGWYKATNASDKKKDKTSKDCRRKIQMTPKQEEVLWRAFVSHLQNNDMLPVVVFT
LSRKRCDLNATTFRNLDLTNAREKHQVHVFFRHNIKHLKGSDRELPQVLMMQELLEKGVG
IHHSGILPILREIVEMLFQSGVVKLLFATETFAMGVNMPARTVVFDSIRKFDGNNFRTLF
PTEYIQMAGRAGRRGHDTTGTVIVMCRYDIPHFNDLKPMMCGEPQTLESKFKVTYSMLLN
LRRVNESVTVEAMMRKSFKESPLASQEASYNNELRKIERELLNLPPLTEIQKKLSTFYHQ
AVDYLEDVKFLNPYLLYSKKTAKSLIEGRVLLISYANHYNKLALLLQVLYHKSSAQYKVL
ILKDANVSTSEITDFKSPQIFEKWCEIISLTKKEIFVPSINPSHEVLTLFPWHILKITNC
QIKIDCSLVLNDWEKRQISRFKNDPPGQTCQTAVQELTSLSFNASTNTRILQPYIEPSSK
NDFLLRIQHRNKLKASLNNMKCMKIPNFEEQFRPVFERNHLEDKKRLLQLKLSDEGMALY
PDYLNMVALLKHFKYIDNDERVALKGRVALQMGSNELLITELILKNVLTVLQPAEIAALL
SALIFQQRTDFEPQLTPSLASACKIMNEVHAELEHLEQYYQLSTLLPLNFGLVEVVYEWA
QAKSFAEIMKMTDVQEGIIVRCIQQLGETLRDVKNAAVTIGDPILKEKMEEASTAIKRDI
VFAASLYTQD
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggctaaatcgacgcagttatttgctggacctccacctatttggcctgatattaaatca
gaactgctgaaatatattgaatgccctgaacgattacctatacatcaactggacagtact
caatgttattggccacgtaaagcagatgtactttccttgttagaatttgatttagctcct
gttaacaccacgcttaaatttgaccgtgatccaacaacaggcaagattggcgagatacaa
gagattgaattacaaggtgcaggggaaacggcaagaaattctatgtctatgactcgtgca
cctggattacttacagatggagttcgaggtaatcctagcaatattccattttggcctggt
ggttttgaagaacctaaagtacctaaaagtgaagacatagatgatatcgactttgagaag
gatttaaggacattagccaaaggatttagctcaggtttagaatttaaaagtgataattgt
acaccaattaattgcataagatacgaagtagaagcttctacattagaagaaactgaaaag
ttaataatcaataatgataacataaatttaatggctgttatacatgaagaaggaaatttg
cttggttcatggtcttcagttgaagagccgaaaaaagaaaatgttcaagctgtagatagt
aacattccctttatggataattccattttacctaaagaaacagatatacctatcttgaaa
atatctgagacacaaacagaacttacaaaggcagaatgggcagagcaactggatgtatct
gcaccagtaacagactttaacaaaagaatacctgatccagcaattacattcagttatgaa
ctagacacttttcaaaaacaagctattctaaaattggaagagaactgcaatgtctttgtt
gctgcacatacatcagcaggaaaaactaccgttgctgaatatgccattgcattaagccaa
aaacatatgacgagagtgatttatacatcccccataaaagctctgtcaaatcagaaatat
cgtgattttaagaggaaatttgaaagtgttgggttattaacaggtgatttgcaaataaat
caaactgcttcatgtctaatcatgacaacagagatcttacaatcaatgctgtattgtgca
tctgatgttttacgagatttagaatttgtcatatttgatgaagtgcattatataaataat
gaagataggggtcatgtatgggaagaaatagtcattcttttaccacagaatattaatata
gtaatgttatctgcgactgtaccaaatccaataatatttgcggattgggtcggtcgtatt
aaaaagcgaaaaatgtacgtgattagcactttgaaaagaccaatacctctgttacattat
ttatatactggtactgatggcaagactaaggatgataagttcttagttcttgatagtaac
agccaatttttattggatggatggtacaaagcgacaaatgcatccgataaaaagaaagac
aaaacgtcgaaggactgtaggagaaaaattcagatgacgccgaaacaagaagaagtatta
tggagagcatttgtaagccaccttcagaacaatgatatgttacccgttgttgtatttact
ctgtcgaggaaacgctgcgatttaaatgctactacattcagaaatcttgatttaacgaat
gcgagagaaaagcatcaagtacatgtatttttccgacataacataaaacacctgaagggt
agcgacagagaattaccacaagtacttatgatgcaagagctcctggaaaagggtgtgggt
atacatcacagtgggatattgccaattttgagagaaatcgtagaaatgttatttcaaagt
ggagttgtaaagttattgttcgcgacggaaacatttgctatgggagttaacatgccggcg
cgcacagtagtgtttgattctatacggaagtttgacgggaacaactttcgtactctattt
ccaactgaatatatacagatggctggtcgtgctggacgtcgaggtcacgacactaccggt
actgttatagtaatgtgtagatatgacattccgcactttaatgacttgaaacctatgatg
tgcggtgaaccgcaaacattggagtcaaaattcaaagttacgtattccatgcttcttaat
ctgagaagggtgaatgaatccgttaccgttgaggcgatgatgcgcaaatctttcaaggaa
tcgccattggcttcgcaagaagcatcatataacaatgagttacggaaaatcgaacgcgaa
ttattgaatttgccgcctttaaccgaaatccaaaaaaaactctctacgttctatcatcaa
gcagttgattatctggaagatgttaaattcctgaatccttatttgctctattcaaaaaaa
acagcgaaaagtttaatcgagggtagagttttgttaatatcatatgcgaatcattacaat
aaactagccctgttactgcaagttttatatcataaaagctctgctcaatataaagtcttg
atacttaaggacgcgaatgtatccacttccgaaattactgattttaaaagtcctcagata
ttcgagaagtggtgcgagattattagtctaacaaaaaaggagatatttgtaccaagcatt
aatccatcacacgaagttttaactctgtttccatggcatatattgaagataactaattgt
cagataaaaattgattgctctttggtattaaatgattgggaaaagaggcaaatctcacga
ttcaaaaacgatccaccgggacaaacatgtcagacagcggttcaagaattgacttctcta
tcatttaatgcttctactaatactcgcattctacaaccatatattgagccttcatcaaaa
aatgattttctattaagaatacaacatagaaataaattaaaagctagtctgaacaacatg
aaatgtatgaaaatacctaactttgaagaacaatttagacctgtatttgagcgaaaccat
cttgaagataaaaagcgattgcttcaacttaaactcagcgatgaaggaatggcattatat
ccagattatctgaatatggtagcactcctcaaacactttaaatacatagataatgatgaa
agagtcgccctcaaaggaagagtcgcgctgcaaatgggtagtaacgaactgctgataaca
gaattgattctaaaaaatgtgttaactgttctacaaccagcagaaatagcagcgttacta
tcagcactaatcttccagcaacgcacggatttcgaacctcaactgacaccatctcttgct
agtgcttgcaaaataatgaacgaggtgcacgcagaattagaacatctagaacaatactat
caactgtcaacattactaccattgaatttcggcttagtggaagttgtctatgaatgggca
caggccaagtcattcgctgaaatcatgaagatgacagatgtccaagaaggaattatagtt
cgttgcatacaacaactcggtgaaacattacgagatgttaaaaatgcggctgtgactata
ggtgacccgattttaaaagagaagatggaagaagcctcgactgcgattaaacgtgacata
gtgtttgctgcgtccttatacacccaagactga
DBGET
integrated database retrieval system
