Cyphomyrmex costatus: 108774881
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Entry
108774881 CDS
T11118
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108774881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccoa03021
]
108774881
03036 Chromosome and associated proteins [BR:
ccoa03036
]
108774881
Transcription machinery [BR:
ccoa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108774881
Chromosome and associated proteins [BR:
ccoa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108774881
PBAF complex
108774881
GBAF(ncBAF) complex
108774881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_3
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
BRCT_2
Motif
Other DBs
NCBI-GeneID:
108774881
NCBI-ProteinID:
XP_018396611
LinkDB
All DBs
Position
Unknown
AA seq
1038 aa
AA seq
DB search
MLSLGPKKDGGPNAKFFEAPEVLTQLDGVKQWLLKNCKKYVQTDPPTNKSLATLLVQILQ
FQEDNLGKNVSKPPMTRLPMKCFLDFKSGGGVCHILATAYRFKQEQGWRRFDFPGGKSSS
RMDRTVDMLMAAERALIQNRCMTVPSIFVRPDVDKNTAAKVKDVVRKHQGTVVENEADAT
HIIYPLVDPMEEEYARPCMRRERSVLIHWYYFPDSYDSWSTLDLPWDYPEGTYTNTNSRT
MYKVSATWALDLDQYNEWMNEEDYEVDDNGQKRVHKYRLSVEDLMAQPSHPPPAKKPKRK
RSPSPPPKLGKRKSSRAPSGIQSASSASSVTAPKKSRGGEEEEDLTQGMEDPPAEPRIVE
VVTTPTNPPITGQGNATTGNSTLASTGSKKQDSELQPIKSGNLTDLDEQIEGDKGSSQGG
QDREERDTSKERGEGGKGDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALSEFFNG
KNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINY
QVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSAAKMLLDLEKKPNITGA
LGPEEKVSAGAMANFGLKIDQYSRKPAVLKNKQAAGATRDWTEQETLLLLEGLELHKDDW
NKVCEHVGSRTQDECILHFLRLPIEDPYLEEGGPEGLGPLAYQPVPFSKAGNPVMSTVAF
LASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASASSDGKYDPAAGLAQSG
IAGTGPPEPPDDTSASSTATPSVPAGAASSPHSTAPTSEAKKEDQDKSKDAMDVEPSQIE
VAKKEDETKEGEEDAKSTDPEAAEAKEKKDKVVRDAQLQSAAAAALAAAAVKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLK
AAEFRARQQAHQRLAQEQQQQQQQQQQQQQQQQQQQQQQQNQQHPPWQPPGTQQQQQQPP
SPQAQPQQPPPHTPPQQT
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcgctaggcccgaaaaaggacggcggacccaacgccaagttcttcgaggcgcct
gaagttcttactcagcttgatggagttaaacagtggttgctcaagaactgcaagaagtat
gtacaaacggatccgcccactaataagagcttagctacgttgctggtacagattctgcag
tttcaagaggacaatcttggcaaaaatgtatcaaagccacctatgacgaggcttccaatg
aaatgcttcctggattttaagtctggtggtggtgtatgtcacattttagctactgcttat
cgttttaagcaagaacaaggctggaggcgtttcgattttcctggtggaaaatcaagttct
cgtatggatcgtacagtagacatgttgatggcagcggaacgtgctttaatacagaataga
tgtatgactgtaccaagtattttcgtgagaccggatgttgacaaaaatacagctgcaaaa
gtaaaagatgtagttagaaagcaccaaggcactgtcgtggagaatgaggcagatgctaca
cacattatctatcctctagtagatccaatggaagaggaatacgcacgaccttgtatgaga
cgcgaacgatcggttctaattcattggtactactttccagacagctatgattcctggtca
acattggatcttccatgggattatcctgaaggaacttatacaaacacaaattcaaggaca
atgtataaagtatcggctacttgggcgttagacttggatcaatataatgaatggatgaac
gaagaagattatgaagtggatgataacggtcagaagagagtacacaaatacaggctttcg
gtggaagatttgatggcacaaccgtctcatcccccacccgcgaagaaacctaagagaaaa
cgatcaccaagcccacctccaaaactcggcaagcgtaaaagtagcagagctccatcaggt
atccaaagtgcttcctctgcgtcatcggtaacggctccaaagaaatcacgcggtggtgaa
gaagaggaagatttgactcaaggaatggaggatcctcccgctgaaccccgtattgtcgag
gtggtcactacgcccacgaatccaccgatcacaggtcagggtaatgcaacaacaggtaac
tccacgttggcgtctaccggtagtaaaaagcaagacagcgagctccaacctattaaatct
ggcaacttgactgatcttgatgaacaaatagaaggagacaaaggaagctctcaaggtggc
caagatagagaagaaagagatactagtaaagaaagaggtgaaggtggcaaaggtgatgaa
ccagaagataatgtgacggaacaaacgcatcacatcgttgttcctagctattccgcctgg
tttgattataattcgattcataccatagagaagcgggctttatcagaattctttaatggt
aaaaataagtccaaaactccagaaatttatcttgcttatcggaattttatgatcgatacc
tatcgattaaatccaactgaatatattacgtcgaccgcttgcaggcggaatttagccgga
gatgtatgcgcgattatgcgcgtgcacgcgtttttagaacaatggggacttattaactat
caagtagacgcagagtccagaccgacaccaatgggacctccaccaacatcacatttccat
gttttatcggacactccgtccggtttggcaccagtcaatccgaatccgccgaaaacacca
caaccatccgctgcgaagatgttgctcgatttggaaaaaaaaccaaacataactggtgcc
ctgggtccagaagaaaaggtttcagcgggcgcaatggcaaacttcggtctgaaaatcgac
cagtattcaaggaaaccggcagtactaaagaacaaacaagcggcgggtgccacacgcgat
tggacagaacaggaaacacttctattactggaaggattagaattacacaaggacgactgg
aacaaagtatgcgaacatgtgggatcgagaacgcaagacgagtgtatcttgcatttctta
cgtttacccatagaggatccatatttggaagaaggcggacccgaaggattagggcctttg
gcttatcaaccggtaccattctcgaaagctggtaatcctgttatgagtacagtcgctttc
cttgcatcggttgtggatcctagagtagccgcgagcgctgcaaaggcagctatggaagaa
ttcgccgcgataaaagatcaagtaccagctgctttattggaccaacatttaagaaatgtt
caagctagtgctagttccgatggtaaatatgatccagcagcagggttggcacaatctggt
atcgctggcacaggtccacctgaaccacctgacgatacatcagcttcttctaccgcgacc
ccgtccgtaccagcgggtgcggctagctctcctcattccacagctccgacttccgaagca
aagaaagaagaccaagacaaatctaaagatgctatggacgtcgaaccatctcaaatagaa
gtcgccaagaaagaggacgaaacgaaagagggtgaggaggacgcaaagtccactgatccg
gaggctgctgaagcgaaggagaagaaggataaagtcgtaagggacgctcagctgcaatct
gcggcagcggcagcgctagcggctgcggctgttaaagccaaacatttagcagctgtagag
gaacgtaaaatcaagtcattggtcgcattactagtcgagacgcaaatgaaaaagctagaa
atcaagctgcgtcactttgaggaattagaaaccacgatggagcgtgaacgcgagggtctt
gaatatcaacggcagcagcttatcaccgagcggcagcagttccacctcgaacagttaaag
gcggccgagttcagggcacgacagcaagcccatcaacgactggctcaagaacaacagcaa
cagcagcagcaacaacagcagcagcaacaacaacaacaacaacaacaacaacaacaacaa
aatcaacaacatccaccatggcaaccacccggtacgcagcaacagcagcagcaaccgcca
agtccgcaggctcaaccgcaacaaccaccaccgcacacaccgccgcaacagacataa
DBGET
integrated database retrieval system
