Cyphomyrmex costatus: 108775103
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Entry
108775103 CDS
T11118
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03013
Nucleocytoplasmic transport
ccoa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108775103
03015 mRNA surveillance pathway
108775103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108775103
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108775103
5.6.2.5 RNA 5'-3' helicase
108775103
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108775103
mRNA cycle factors
Common to processing body (P body) and stress granule
108775103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
AAA_10
AAA_7
AAA
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
108775103
NCBI-ProteinID:
XP_018396886
UniProt:
A0A195CLG1
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDVTQSQSSQ
PVQVNGTNGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGF
IPAKADSVVVLLCRQPCAAQTSLKDMNWDQEQWKPLIEDRSFLSWLVKFPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQSALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNMPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGVTASA
RNKSGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacgggcccagcagccagaccctcacgttcctcgacaccgaggag
acagacctgatcggggcggacactcagggtagcgagttcgacttcaccgacttcaccctg
ccgtcgccgagtcagacccaggcctcgcagcacgacgtcacccagtcgcaatccagtcaa
cccgttcaggttaatggaacgaatggtagctcgtcattagatttgaagatttctggagca
gcccagagtcttgctgagttgcaatttgaagaggaggaggaagaagcgtattacaatcgt
gatttgcctgatcatgcatgtaaatactgcggtattcacgaagcgtcctgcgtggttatg
tgcaatgtctgccggaaatggttttgcaatggacgtggcaatacatcagggtcacacatt
atcaatcaccttgtccgtgctaaacacaaggaagtcactttacacagagatggccctctt
ggagagactgttttggaatgttattcctgtgccacaagaaatgtttttgtattgggcttt
attcctgctaaagctgattccgtagtcgtattgctatgccgtcaaccatgtgcggcacag
acttctttgaaagatatgaattgggatcaagaacaatggaagcctttgatcgaagatcgc
agctttttgtcttggttagtaaagttcccatccgaacaagaacagttgagagctagacaa
atctctgcgcaacagattaataaattagaggaattatggcgggacaatgtcgatgctact
ttccaagatttagaaaaacctggagtagacgaagaaccgcagcaggttttattgcgctat
gaggatggatatcagtatcaaaatatttttggcccacttgtgaaattggaagccgattac
gataaacgtttgaaagaatctcaaactcaagagaacattgaagtacgatgggacgtaggt
ttaaacaagaagactatcgcgtattttatgctggccaaaacggatggagatatgaaattg
atgcacggagatgaactaagacttcgttacctgggagaacttcacaagccttggtctggc
attggacacgtaattaagatccctgacaattacggagaggaagtcggaattgaactgaaa
aataattctggagcaccgactgaatgtattagcaactttgtcgttgactttatttggaag
agcacaagttttgatcgaatgcaatccgcactacggaaatttgctgtggatgatacatct
gtgtctgcttacatatatcatagactattaggacacgaagtagaagaggtcctgtttcgt
tgtcatctccctaaacattttagtgcaccgaatctaccagacttgaatagatcacaagtg
tacgctgtaaaacacgctatacaacgacctttatctctgattcaaggaccacctggaaca
ggtaaaaccgtgacaagcgctactattgtatatcaattggtgaaacagaatggcggcccg
gttctcgtatgcgctccttcaaataccgctgttgatcaattgaccgagaagatacataaa
tcaaatttgaaagttgtacgattgtgtgccaaatcgcgagaagccatcgattcaccagtg
agtttcctcgcattgcataatcaaataaaaaacatggagacaaacaccgagttgcagaag
ttacaacaactgaaagacgaaacaggcgaattgtcgagtgtcgacgagaagcgctacaga
ctcttaaagaaagcggcagagaaggaacttctcgaagcggccgatgtaatttgttgcacc
tgcgttggtgctggtgatcctagattgcacagattaaagttccattctatacttatcgat
gagagcatgcaggctactgagccagagtgcatggtaccagttgttctaggagcgaagcaa
ttaatcctagttggagatcattgccaattaggtccggtcgtgatgtgcaagaaagccgct
agagccggtttatctcagtctctgtttgaaagattagtagtattaggaattagaccattc
cgcttggaagtacaatatcgtatgcatcctgatctttcgcgatttccatctaattttttc
tacgaaggttctctgcagaatggtgtttgcgctgacgaaagaaagttattgaaaatcgac
tttccctggcctgcaccagacaaaccgatgtttttctacgttacacaaggtcaagaagag
atagctggaagtgggacatcttacttaaatcgtaccgaagcatccaacgtggaaaagata
acgacgcgattcttacgttgcggtgtaaaaccggagcagattggagtgataaccccttac
gaaggtcagcgggcctatctcgtacaatatatgcagtaccaaggttctctacattcgaaa
ttatatcaagagattgaagtggcgagtgtggatgcttttcaaggacgagaaaaggacatt
ataataatgtcctgtgtacgatccaacgaacatcagggtattggatttttaaatgatcct
agaagattgaatgtagcgttgactcgggcaaaatatggcatcatcatcgtaggaaatcct
aaagtactttcgaagcaaccgctctggaaccacctacttagtttttacaaggagcagaag
gtattggttgaaggaccgttgaacaatttgaaggagtccatgattcaatttgctaagcca
aagaaactcgtgaacgcagccaatccaggctcgcactttatgtctacatcgatgtacgat
gcacgcgaagccctaattcccggatcagtttacgatcgttctggcgctcaagtgaatggt
acgcagaaccataatccgtactaccaaagaaacgtgccgctcgacattttcagtcgtacc
catgatactatcagctacattagtccggaacgagcacaagcagctatgaacaacatgcct
gtaccggttggtatgttcatgaacatggcacacgtgccgccgcgtttctacaatcaacat
caacaagcattgcaagcacgtcagaatcaaagaaaccgacgcggcgtcactgcttcagcg
aggaataaatcaggtccgcgtatgggtaaattgagtcaaaccgagcaaaatacacaaccg
tacagtcaaccgggactaccgctgacgcagggtacgactcagggcatgtcccagcctggt
ttcagtctctcgcagcctggtcttagtcaagcagaactttctcaggactcgttcgcggtt
ggcgaattccaatcacagatggacggcctgttatcgcaggactcgacttaccaaggcgac
cgaagtggcttctatcagtcgggccagtcgcaagccggaggacagttctcacagccctac
tga
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