Cyphomyrmex costatus: 108775282
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Entry
108775282 CDS
T11118
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03013
Nucleocytoplasmic transport
ccoa03015
mRNA surveillance pathway
ccoa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108775282
09122 Translation
03013 Nucleocytoplasmic transport
108775282
03015 mRNA surveillance pathway
108775282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108775282
03041 Spliceosome [BR:
ccoa03041
]
108775282
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108775282
Spliceosome [BR:
ccoa03041
]
Complex C
Other components
EJC/TREX
108775282
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
RRM_1
Motif
Other DBs
NCBI-GeneID:
108775282
NCBI-ProteinID:
XP_018397095
LinkDB
All DBs
Position
Unknown
AA seq
874 aa
AA seq
DB search
MRRKSERNKTKGSPEKKVEKPTRKSTRRRGKRSPSTSSEQDPFIEDVAKSAIQLKEIEKE
TSVQTRLQSKELEQIPVNKQEEKVSSTDVDIKVDSPEDEEDNGGSVWKVARADASPGEIQ
KLKLCRQRNTSEPSLDAPPSSRKSVKSSSKWQESGEGVAEEADSADEQLVSCTRTLSSTE
QPNDPSSSYPGQDSNEEVSDSKEILPETTSANLLSDDKPNIDQHGESNEANCTAQIVDIE
PGKPGSMTSSPVPAPSANSEEIVTTIIVKEDKPVENISEKPTETFVKETNVENMKNVRKD
MNSDDEEEEEEEEGEEDKAKTNRPVDSSSDSNDEMCSKRSRTSSDRTSSHAIRRKHRNKY
RDSSNSDTPDSEDEPIDRKISESYVEEEEEEQQKRKPSTEYLQENDKQQSVSPERTNSHS
NNIEKIEIDEHSETVENKLEKNPTEKLEQSTPANTQVITHKPVKVNLKRSFSTRILSEKN
ETKRDDADASINESSSQNKENGNEQEPKCVPRKRRWGTALSTDTAPSFSISTDSLKALVP
GAKPLSINEVRLSKDDDEDRDRHRNNDKRHNSNDITYDKATDENLQKNGAAKKGNGKVDN
HIGKLTRRKISIVKEIPHIKSPSPPTSKPTNILLIKNLVRPFTLNQIKELLSRTGTIVEN
GFWMDRIKSKCIVEYSNEDQAFETRQALHGISWPMSNPKKLHVEYATKEDMETARELSKE
QPVARKTEPLTSDLWQQDWSRDEKTNTKVTVVREWDLGKEDGQQHIREKEREKKEHDKKR
RVRSRSPILDAHLSAPARKFKKKEDDPPPAKLLDDLFRKTKATPCIYWLPLTNEQIVVKE
EMRRQHMAEHARRLEEMRRADRNRDGRRRRSPRK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgagacgtaagagtgaaagaaacaaaacgaagggatctccagagaagaaagttgagaaa
ccaacaagaaagtcaacgcgtaggcgtggcaagagatcaccttctacttcatctgagcaa
gacccttttatcgaggatgtggctaaaagtgccattcaacttaaggagattgaaaaagag
acaagtgtacaaacgcgtctgcagagcaaggaattagagcaaatacccgtaaataagcaa
gaggaaaaagtttcttctactgatgtagacataaaggtggattcacctgaagacgaagag
gacaatggtggctcggtgtggaaagtagctagagcggatgcatcacctggtgagatacag
aagctgaaattatgcaggcagcgcaacacatcagaaccatcattagatgcaccaccatcg
agtaggaaaagcgtcaagtcaagtagcaagtggcaagaaagtggtgagggcgttgcagag
gaggctgactcggcggatgagcaactggtttcttgtacaagaacgctcagtagcactgaa
cagccgaacgatccctcctcttcatacccaggtcaggactccaacgaagaggtaagtgat
agcaaggagatcctgcctgaaaccacttcagccaacttgttgtctgatgataaaccaaac
atagatcagcatggcgaatcaaatgaggcaaattgcactgcccaaatagttgatatcgaa
cctggtaagccgggtagcatgacatcgtctccagtaccagctccgagcgcaaacagtgag
gaaattgtcaccactatcatcgttaaggaagataagcctgtggaaaacatcagtgaaaag
ccaacggagacatttgtcaaagagactaatgtggaaaatatgaaaaatgttcgaaaagat
atgaatagtgatgatgaggaggaagaggaggaggaggagggggaggaggataaagcaaaa
acgaatcgtccggtagactcatcatctgattcaaatgacgaaatgtgttctaaaagaagt
agaacaagtagtgatcgaacgtcgtcacatgcgattcgtagaaaacatcgaaacaaatat
agagattcgtctaattcagatacacctgattctgaagatgaacctattgacaggaagatc
tctgaatcttatgtggaggaggaagaagaagagcagcaaaagagaaagccaagtacagaa
tatttgcaagaaaatgataaacaacaatcagtgtcgccggaaagaacaaattctcattca
aataatatagaaaaaatagagatcgacgagcacagtgaaactgttgaaaataaattggaa
aaaaatccaactgaaaaattagaacagtctacaccagctaacacacaggtgatcactcac
aagcctgttaaagtcaacttgaaaagatcattctcaacaagaatattatctgaaaagaat
gaaacaaaaagagacgatgctgatgcaagcatcaatgagtccagtagtcaaaataaggaa
aatggtaatgaacaagaaccaaaatgtgtgccgaggaaacgtcgatggggaaccgcactt
tctacggataccgcaccctcgttttctatctctaccgattcgcttaaggcattggtgcca
ggtgcaaagccattatctatcaacgaagttcgtctttcaaaagacgatgatgaggacaga
gatcgacatagaaataacgataaacggcacaattctaatgatattacatatgataaggca
acagatgaaaacttgcaaaaaaatggcgctgctaaaaagggcaatggaaaagtagataat
cacatcggtaaattgacaaggcgaaagatatcaatagtgaaggaaataccgcacataaaa
tcgccaagtccaccaacatctaaacctaccaatatccttttgatcaagaatcttgttcgc
cctttcacactaaatcagatcaaagaacttctctcacgtactggcaccatcgtagagaac
ggattctggatggatcggattaagtctaaatgcattgttgaatattctaatgaggatcag
gcttttgagacaaggcaggcacttcacgggatttcttggcctatgtctaatccaaaaaag
ctccatgtagaatatgctacgaaggaggatatggagactgctcgggaattgtccaaggaa
caaccggttgctcgcaaaactgagccactcacgtcggatttgtggcaacaagattggagt
cgtgatgaaaagactaatactaaagtgaccgtggtgagggagtgggatttaggtaaagag
gacggccagcaacatattagggagaaagagcgtgaaaagaaggagcatgataaaaaacga
cgagtgaggagtcgcagccctatattggacgcacatttatcggcaccggctcgcaaattc
aagaagaaagaggatgatccgccaccggcaaagcttttggatgatctctttaggaagaca
aaggcgacaccttgcatatattggttgccgcttacgaatgaacagatagtcgtgaaggag
gagatgcgacgacaacatatggcggaacacgcgcgcagattagaagagatgagacgtgcc
gatagaaatagggacggccgacgtcgacgtagtccgagaaaataa
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