Cyphomyrmex costatus: 108775993
Help
Entry
108775993 CDS
T11118
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108775993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108775993
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108775993
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
ASA1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_Aladin
DSE1_N
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
CFAP251_N
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_NOL10_N
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR75_1st
PEP5_VPS11_N
PAC11
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
108775993
NCBI-ProteinID:
XP_018397982
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSANIQFANPPPAVSLPNMSVPPPTTPNLSAPPPNLTTINTSGNYQHRYANHRDGSRGFF
KPFRPYHAPKIVAGGQDTLQDEFDGKRLRKSVMRKTVDYNSAIIKSLENRVWQRDYRDRR
ALQPDVIYYPDLLPPPSYIDNPINAVTTRFVKTATNKMRCPIFCMAWTPEGRRLVTGASS
GEFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQSNMNNVKMFQA
HKEAIRGLRYIIHHTSPYVSCVTVADRSILAIVRISDVTLLLFLFWFCAVSGKAIVILVW
VHSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDN
QQPVKLWDPKTGQSLATLHAHKSTVMDVKWNENGNWLVTASRDHLLKLFDLRNLSQEVQT
FRGHKKEASSVAWHPSHEGLFCSGGSDGAILFWHVGADKEVGAIEQAHDSIVWTLAWHPL
GHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPAGAAGIDDHEIADEAAVIPGMGPED
RINADCESEEKNGGIPGLDLDHAVDEGKKFANKKVPYSKPIPRNFQAQWNEMEAEDIEQV
EALNAFVNQLIETTPGAVPLNEVTPNAIILYGKMIPVESDSKLAEAISKGTDAINKLVFS
GEIEELRDVVGPPDNMDEAEEYLQDDGEIDYSKVPDVDLPPPLPSSKFAQNPELLKSLNR
GGKRKFDQLIGWSDGGASDRISKMHQPVFGGIITEDSQSSDTDLRFNKSSLAAENNSFHS
GQDEDHRRSGLHDLSRSNRGDEDLRFNMSAGPGRPGSLNEYDSRGNNFVDKDFRNFLSSK
SLNDDDYDEREHDNAGGRWDDEETDGSHGKLDNTFGNNFDKRDNGVAMGMSNSMHSHMAG
IPHLPNHHNMQNINPNMPPPIPSLVPHPNMSQHPGIQGKSPHPGMPGLDGPMPPHMMPHH
PNMHPGFGPNGPPPGGFGPNFRPPPNSNFGPNHFRPNPMLPFGPNQGPPPFGNNFQGPPN
FRGPNVAPMNFDRPSFGPNFRGQTPQGQLNNFNSNFGNFGKNGPNRGISRGGGDNMGRSG
YSNRGRGRDNDQSRGGRGRDNY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaatattcaatttgcaaatccaccgccggctgtaagcttacccaacatgtct
gtgccaccacctacaactccaaatttgtcagcaccaccaccaaatttaaccactataaac
acatcgggaaattaccagcatcgatatgcaaaccatagagatggtagtcgcggtttcttc
aaaccatttagaccttatcatgctccaaaaattgttgctggaggacaagatactttgcaa
gatgaatttgatggcaagagactgaggaaatctgttatgagaaagactgttgattacaat
tctgccattattaaaagtttagaaaatcgagtatggcagcgggactatagggatcgtcgc
gcacttcaaccagatgtaatatattatcctgatttactccctccaccaagttatattgac
aatcctataaatgcagttactacgaggttcgtaaaaacggctaccaataaaatgcgttgt
ccaattttttgtatggcttggacaccagagggtagacgtctcgttactggcgcttcgagt
ggagaatttactttgtggaatggccttactttcaattttgaaactattctacaggcacat
gacagcccagtcaggacaatggtatggtcacataatgaaagctggatggtaacaggggac
cacgcgggctatgtgaaatattggcagagcaacatgaacaatgtgaagatgtttcaagca
cacaaagaagcgattagaggactcaggtatatcatccaccacactagtccttacgtctct
tgcgtcactgttgccgatcggtccatccttgccatagttaggatatcggacgtgactctt
cttctcttccttttctggttttgtgcagtttctggtaaagcaatagtgattcttgtatgg
gtacacagtttcagcccgacggatcacaaattggcaacttgcagtgatgatggaactgtc
agaatttgggactttcttcgctgtcatgaggaacgaattctcaggggtcatggtgcagat
gtcaaatgcgtacattggcatccacaaaaaagtctagtcatttctggcagtaaagacaat
cagcaaccagtgaaactttgggatccaaaaactggacagtctctggcgactctgcatgca
cataaatctaccgttatggatgtaaagtggaatgaaaatggtaactggttagtaactgca
tcaagagatcatcttttaaaacttttcgacctcaggaatcttagtcaagaagttcagact
ttccgtggccataaaaaggaagcatctagcgtcgcatggcatccaagccacgaaggtctc
ttttgtagtggtggtagtgatggcgccatactcttctggcatgttggagcggataaagaa
gtgggagcgatagaacaggcgcacgatagcatagtttggacattagcttggcatccatta
gggcatatcttatgctctggcagtaacgatcatacgtccaagttttggacgcgtaataga
ccaggagatctgatgagagataaatacaatctcaatacattaccggcaggtgcagctggt
atcgatgatcacgaaattgctgatgaagcagcggtgatacctggtatgggaccagaggat
agaatcaacgcagattgtgaatccgaggagaaaaatggcggaattcctggtctggattta
gatcatgcggtggatgagggcaagaaattcgccaataagaaagttccgtacagtaaaccg
atacctcgaaatttccaagcgcaatggaacgaaatggaagctgaagatattgagcaagtt
gaagcacttaatgcatttgtcaatcaattaatagagacaacgccaggtgccgtcccacta
aacgaagttacgcccaacgccattatattatacgggaaaatgattccagtggaatctgac
tccaaactggctgaggcaatcagtaaaggaaccgatgccataaacaaattagtattttct
ggtgaaatagaagaactacgagacgtggtaggtccaccggataatatggatgaggccgaa
gaatatctgcaagatgacggcgagatcgattattctaaagtgccagacgtagatttgcca
ccacccttgcctagctccaaattcgcacagaatccggagctgttaaaatcactaaatcgc
ggcggtaagcgtaaattcgatcaattgattggctggagcgatggtggagctagcgatcgt
atatctaagatgcatcagccagtctttggtggtataattacggaggactcacaatctagc
gacaccgatttgagatttaacaagtcaagtctcgccgcggagaacaattccttccatagt
ggtcaggatgaagatcataggaggagcggtcttcacgatctatcgagaagtaatcgtggc
gatgaggatcttagattcaatatgtccgctggtcctggtagacccggttcactcaacgaa
tacgattcgcgcggcaataatttcgtggacaaggattttcgcaattttttgtcatccaag
tctttgaatgatgacgattatgacgagcgggaacacgataacgccggcggccgctgggat
gacgaagagaccgatggatcgcatggcaaattggacaatacgttcggcaacaatttcgac
aaacgcgataacggcgtagcaatgggcatgagtaatagtatgcatagtcatatggctggc
atacctcatctgccaaatcatcataacatgcaaaatattaatcccaacatgccgccaccg
ataccaagtctagtaccgcatcccaatatgtcacagcatcctggcatacagggtaaatcg
ccgcatcctggtatgcctggtttagatggcccgatgccaccccatatgatgccgcatcat
ccaaacatgcatccgggctttggaccgaatggaccaccgcccggtggtttcggacccaac
tttcgaccacctccgaatagcaatttcggtccgaatcattttagaccaaatccgatgttg
ccatttggaccgaatcagggcccgccgccgtttggtaataactttcagggaccgcccaac
tttcgcggaccgaatgtcgctccgatgaatttcgaccgaccaagtttcggacctaatttt
cgcggccaaactccacagggtcagttgaacaattttaattccaactttggcaactttggc
aaaaacggtcccaatcgcggcataagtcgtggtggtggtgacaatatgggcaggagtggc
tatagtaatcgcggcagaggacgtgacaacgatcaatcaagaggagggaggggaagagac
aattattga
DBGET
integrated database retrieval system
