Cyphomyrmex costatus: 108776420
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Entry
108776420 CDS
T11118
Name
(RefSeq) splicing factor 1-like
KO
K13095
splicing factor 1
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108776420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccoa03041
]
108776420
Spliceosome [BR:
ccoa03041
]
Complex A
Other components
Complex A specific factors
108776420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_5
AP3D1
Adeno_PIX
Motif
Other DBs
NCBI-GeneID:
108776420
NCBI-ProteinID:
XP_018398529
LinkDB
All DBs
Position
Unknown
AA seq
617 aa
AA seq
DB search
MNQSRNFTSLLNPSYLQNAQQQQQQNVTTSAAAAAAAAAAAVSAAIANGTQAGINAVNVV
TQNRKREAEGDSKQEKELKEDRKKRKKTRWSGSEHDKTFIPGMPTVLPTNLTPDQERAYL
FQLQIEEISRKLRTGDLGIPLNPEERSPSPEPIYSSDGKRLNTREYRTRRKLEEERHNLI
QKILKINPEFKPPPDYKPPIIRVHDKVMIPQEEHPDINFVGLLIGPRGNTLKSMEKETGA
KIIIRGKGSVKEGKVGRKDGQPLPGEDEPLHAYITANNLDAVKKAVERIHEIIRQGVEVP
EGQNDLRRNQLRELALLNGTLRENDGPRCTNCGASDHKSWLCPDKPNVTNNIVCSSCGGA
GHIARDCRSKRPGQGGPAAAGMGGMGQAGDKAKIDEEYMSLMAELGEGPPPDRSKTGQNR
QTPNPNYPGLFDRQQPPRALMAAPAHPPPQMMQSGPMMPPPGMAPPPWSQGSEGMNNMNM
QWQPPVSMPPPPGVMQPPPPPPGSTTQPNIPPLMPWMTGNNQPPPPGQMPPTQIPPPGMG
IPPWQQGQQGPMRPPPPGTAPPPGFPGSWQPQQMGGWPPAAPVPPPPQQQTPAPPGIDLN
TLPTLLAQPPPPPPPTS
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaatcgcgtaatttcacgtcgctgctgaatccaagctacctgcagaacgctcag
cagcaacaacagcagaatgtcacgacctcggcagcggcggcggccgcggctgccgcggct
gcggtgagtgctgcaatcgcgaacggcacgcaggcgggcattaacgcggtcaacgtcgta
acgcagaatcgcaaacgggaagcagaaggtgatagtaaacaggagaaagagttgaaagaa
gatcgtaagaagaggaaaaagactagatggagtggtagcgaacatgacaaaacatttata
ccaggaatgccaacagtactaccgacaaatctgactcctgatcaggagagggcttatctc
tttcagctgcagattgaggaaatcagcaggaagctacgcactggagatcttggcatccca
cttaaccctgaggaaagatccccatctccagagcctatttacagtagcgatggtaaacgg
ttgaacacgagagaatatcgtacaagacgtaaattagaggaagaacgtcataatctgatt
cagaagattcttaaaatcaatccagaatttaagccaccaccagattataagccaccaata
atacgagttcatgataaagtaatgattcctcaagaagagcatcctgatataaattttgtt
ggtttacttattggaccgcgtggaaatactttaaaatctatggaaaaggaaactggtgca
aagattataattcgtggaaagggttctgtgaaagaaggaaaagttggtcgaaaagatgga
cagcctttaccaggcgaagacgaaccattgcatgcatacattactgcaaacaatttagac
gccgtgaagaaagctgtggaacgaattcacgaaattattcggcaaggtgtagaagtacca
gagggtcaaaacgacttgcgacgtaatcaactacgcgaattagctttattgaatggaaca
ttacgcgagaacgatggacctcgttgtaccaattgtggtgcttcagatcacaagtcttgg
ctgtgtcccgataaaccaaatgtgacaaacaacatagtgtgttcaagttgtggtggtgca
ggacatattgctcgagattgcagatcaaagagacccggtcagggaggtccagcagccgct
ggaatgggaggaatgggtcaagctggagacaaggccaaaatagatgaggagtacatgtcg
ctcatggcggaattgggagaaggcccgccaccagatagatcaaaaacaggacaaaacaga
cagactcccaatccaaattatcctggactttttgacagacaacagccacctcgtgcatta
atggcagctccagctcatcctccgccacagatgatgcagagcggcccaatgatgcctcca
ccgggtatggctccgccgccgtggagtcaaggaagcgaaggaatgaacaacatgaatatg
caatggcagccaccagtgagcatgccaccaccaccaggtgtgatgcagccaccaccaccg
ccgcccggttccactacgcagccaaacattccaccactaatgccatggatgacaggtaac
aatcaaccaccgccacctggccaaatgccgcccacgcagattcctccacctgggatgggc
ataccgccgtggcaacagggtcaacaaggaccgatgcgaccaccaccgccaggcacagca
ccgcctccgggatttcccggtagctggcaaccgcaacaaatgggtggctggccaccagct
gcgcctgtcccacctccgcctcaacaacaaactcctgcgccacccgggattgacttgaat
acactgccaacgttattagcgcaaccacctccgccacctccgcccactagttag
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