Cyphomyrmex costatus: 108776864
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Entry
108776864 CDS
T11118
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03015
mRNA surveillance pathway
ccoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108776864
09123 Folding, sorting and degradation
03018 RNA degradation
108776864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108776864
03041 Spliceosome [BR:
ccoa03041
]
108776864
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108776864
mRNA cycle factors
Stress granule specific factors
108776864
Spliceosome [BR:
ccoa03041
]
Complex C
Other components
Complex C specific factors
108776864
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_10
RBD_DEAH11
RRM_occluded
Nup35_RRM_2
L_PA-C-like
POP1_C
Motif
Other DBs
NCBI-GeneID:
108776864
NCBI-ProteinID:
XP_018399096
UniProt:
A0A151IEQ6
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MNPGAPNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFS
AFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKER
EKELGEKAKLFTNVYVKNFGEDMTEDKLRDMFEKYGTITSHKVMSKDDGKSRGFGFVAFE
DPDAAEQAVIELNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYV
KNLDDTIDDERLRKEFTPFGTITSAKVMMEDGRSKGFGFVCFSQPEEATKAVTEMNGRIV
GTKPLYVALAQRKEDRKAHLASQYMQRMANVRMQQMGQIFQPSNAGSYFVPTLPQPQRFY
GPAQMAQIRATPRWPAQPNQVRPNAQTGTSGFASMQAAPFRAAPRAPAAQSGALRNSMSA
RPITGQQAIGGANMQSRTMAGPTVGVSPGQSRPSNYKYTANMRNPPQAAMALPAPSGPSV
QQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSEL
LHMLEHGESLKAKVEEAVAVLQAHQAKQAVAPKKE
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctggtgcgcccaactaccccatggcctcgctctacgtgggcgatttacacacc
gacatcaccgaggcgatgctgttcgagaaattctcgtcagctggacccgtgctgtcgatc
cgcgtatgccgcgacatgatcacccgccgctcactcggctacgcatatgtcaacttccag
caaccggctgatgctgaacgcgcccttgataccatgaacttcgacatgataaaagggcga
cctattcggatcatgtggtcccagcgcgatccctccctacggaagtcgggcgtcggaaat
gtatttattaagaatctagacaaaaacatagacaataaagcgatgtatgatacattttcc
gcgttcggtaatatattaagctgcaaggttgcgcaagatgaatcgggtgcgtcaaagggt
tatggctttgtacattttgaaacggaggaagcggctaacaaatctattgacaaagtcaac
ggaatgttgttaaatggcaaaaaggtatacgttggcaaattcattccgcgcaaggaacgt
gagaaagagttgggtgagaaagccaaattgttcacgaacgtctacgtgaaaaacttcggc
gaagatatgaccgaggacaagctgagggacatgttcgagaagtacgggaccattacaagc
cacaaagtgatgagcaaggacgatggcaaatcacgtggcttcggatttgtcgcgttcgag
gacccggacgctgccgagcaggcggtgatcgaattgaacggcaaggagatcgccgagggc
aagtgcatgtacgtcggacgtgctcagaagaaagccgagcgccaacaggaacttaagcga
aaatttgagcaattgaaaatcgagcggctgaatcgatatcaaggcgtgaatttatacgta
aagaatctggatgatacgatcgatgacgagcgtctgcgtaaagaatttacgccgtttggc
actatcacctctgcgaaggtgatgatggaagatgggcgtagtaaaggttttggctttgtg
tgcttctcgcaaccggaggaagctaccaaggctgttaccgaaatgaatggacgcatcgta
ggtactaaacctctctatgttgctctagcgcaacgtaaggaagatcgtaaagcacatctt
gcctctcagtacatgcaacgtatggcgaacgttcgcatgcagcagatgggtcagatattc
caacccagtaacgccggcagttacttcgtgcctactctgccacagccgcagcgattctac
ggacccgctcaaatggcgcagatccgtgcgactccgcgctggccggcgcaaccgaatcaa
gtacgaccgaacgcgcagactggtacctccgggttcgcgtctatgcaagctgcaccgttc
cgagcggcaccgcgcgctcctgccgcccagagtggtgctttgcgtaacagcatgtccgcc
agacctatcacaggccaacaagcaattggtggcgccaacatgcagagccgcacgatggcc
ggtccaacagtcggtgtctcgcccggtcagagccgtccgtcgaattacaaatacaccgca
aatatgcgcaatccaccacaagcggccatggctctacctgcacctagtggtccttcagtg
cagcaagcggttcacatccagggccaagagccgctcaccgcgtcgatgctagccgcggcg
ccgccgcaagagcaaaaacaaatgttaggggaacggttattccctctgattcaatgtatg
tatccacaactgaccggtaagatcaccggtatgttgttggagatcgataacagcgaacta
cttcacatgctggaacatggcgagtctctgaaggccaaggtcgaggaagctgtggccgta
ctgcaagcccatcaggccaagcaagcagttgcgccgaaaaaagaataa
DBGET
integrated database retrieval system
