Cyphomyrmex costatus: 108777096
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Entry
108777096 CDS
T11118
Name
(RefSeq) ATP-dependent RNA helicase DBP2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108777096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccoa03041
]
108777096
03009 Ribosome biogenesis [BR:
ccoa03009
]
108777096
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108777096
Spliceosome [BR:
ccoa03041
]
Complex A
U1 snRNP components
U1 related factors
108777096
Complex B
108777096
Ribosome biogenesis [BR:
ccoa03009
]
Eukaryotic type
Pre-60S particles
Helicases
108777096
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108777096
NCBI-ProteinID:
XP_018399400
LinkDB
All DBs
Position
Unknown
AA seq
709 aa
AA seq
DB search
MYNGYSQVQNNYRSRGNRDHGNRNGGVSGTYWNSQQQSQKEYGTKKQQNHKKTPGDLLKK
PSWDLANLPKITKNLYVPHVNILNRTPDEISKYHAGKEITVKGNNTPSPIQAFEESNFPD
YVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVHINHQPRLS
RGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLERGVEICIA
TPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWP
KEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLSQLLREIGTERGSK
MIIFVETKKKVDDITKTIKREGWSAISIHGDKSQPERDYVLSEFRNGKTMILVATDVAAR
GLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKELIAVLEEA
GQAINPQLADMANSVRNQYGKGRQRWSHVRGNKDNISHGSPRSNISPTINNWQHMLQTNQ
QQHGHHNQMVQEKTVARGHQRNNGYQVNRQNNYQPQHSYQQQHQQRQSITGYQNNYQATS
NTCQPTHQTTSAPRYQGRTGYQGNRFQNRQNGFNGNQSGPNVYSMPPPFMMPSSGHADSG
IQNLVNNKFFQTNRPPPNAGACAYQSMGYGQFQAVPPYGYPYPPTPVQQ
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacggatactcgcaagttcaaaacaattacagatctagaggaaatcgagatcat
ggcaaccgcaatggaggggttagcggaacttattggaacagtcagcaacaaagtcaaaaa
gagtatggcacaaagaagcaacaaaatcacaagaagacgccgggcgatttactaaagaag
cctagttgggatttggcaaatttgcctaagataacaaagaatttgtacgttcctcatgtt
aacatcttgaaccgaacgcctgacgagatcagcaaatatcatgctggtaaagagattact
gttaaaggcaacaatacgccttctcctattcaagccttcgaagagagcaactttcctgat
tacgtgatggaagagatcaggaagcaaggttttgccgaacccactgcaattcaagctcag
ggctggccaattgcactcagtggccgagatttagttggaattgctcaaactggttccggg
aaaactttggcatatatccttccggcgacggtacacatcaatcatcagcctcgccttagt
cgaggcgacgggccaattgtattgattcttgctcccacgcgcgaattggctcaacaaatc
caaacagttgcacgtgattttggctcgtcttcatgcatccgcaacacctgcatcttcggt
ggttcgccgaaagggcctcaagctcgtgatcttgaacgcggagtggaaatctgtatcgca
acacccggtagactgattgatttcctagagaaaggtactacaaatctgcgcaggtgcaca
tatttggttttggatgaagctgatcgaatgttggatatgggtttcgaaccacagatacgc
aaaatcatcgagcagattcgacctgatcggcaagtactcatgtggtccgccacttggccc
aaagaagtgcaagctctcgctgaggactttctcagtgattatatccagattaatatcggg
tctctgactttggcggctaatcacaatattcggcagatcgtcgagatctgccaagaacat
gagaaggaaatgaaactatcacaattattgcgcgaaattgggactgaacgcggtagcaag
atgatcattttcgtggagacgaagaagaaagtagatgacataacgaagacaattaaacgc
gaaggctggtcagcaatttcaatccacggcgataaatcgcagccggagcgcgattacgtt
ctatcagaatttcgcaacggaaaaactatgattttggttgcgacagatgtggcagcacgt
ggcttggatgtcgaggacgtgaagtacgttatcaattttgattaccccaacagctccgag
gactacatccacaggatcggcagaaccggtcgctgccagagcgcaggcactgcctatgcc
tactttactccgaataatgcgagacaagcaaaggagctgatcgcagtgttagaggaggcc
ggtcaagctataaacccacaattggcggacatggcgaattctgtcaggaaccagtacggt
aagggacggcaacgatggagccacgtacgaggcaataaagataacatttctcatggaagt
cctagaagcaacatcagcccgacaataaacaactggcagcatatgttgcaaacgaaccaa
cagcaacatggacatcacaatcaaatggttcaagagaaaaccgtggcacgcggtcatcag
cgcaacaatggctatcaagtcaatcggcagaacaattaccaaccacaacattcctatcag
caacagcatcaacagcgacagtccattactggctatcagaacaactaccaggcgactagc
aacacatgtcagcctacgcatcagactaccagcgcacctagataccaaggcaggactgga
tatcagggtaatcgtttccagaatcggcagaacggcttcaacggcaatcagagcggacct
aatgtttactcaatgccaccgccgtttatgatgccatccagtggacacgcggactccggg
atccagaatcttgtgaacaacaagtttttccaaaccaaccgaccgccgcccaatgctggt
gcctgtgcgtaccaatcaatgggctacggccagtttcaggcagtgccgccgtacggctat
ccgtatccgcccacgccagtacagcagtga
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integrated database retrieval system
