Cyphomyrmex costatus: 108777116
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Entry
108777116 CDS
T11118
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ccoa Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccoa01009
]
108777116
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108777116
04131 Membrane trafficking [BR:
ccoa04131
]
108777116
03036 Chromosome and associated proteins [BR:
ccoa03036
]
108777116
Enzymes [BR:
ccoa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108777116
Protein phosphatases and associated proteins [BR:
ccoa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108777116
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108777116
Membrane trafficking [BR:
ccoa04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108777116
Chromosome and associated proteins [BR:
ccoa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
108777116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
108777116
NCBI-ProteinID:
XP_018399422
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MTESTVNLDLFTAAKQLADSEIELIKVIENSTKCQRTATNMLTNAKKTKKPGKSKNARPS
AALLAAKQEAAKRQLLSDKKSNNFVPDIYQKAIDSYKMIRKQTGLVFDRSMAEHECIWDP
NYPECPARFTQVLQRCEELDLVQRCKLIEPRLATENELLTKHSQKQINILKSTDGSTDSE
HLELLSSKYDCVYIHPSTYRLSLLAVGSTINLVESVCKSEIQNGMAIIRPPGHHAMKSEY
CGYCFFNNVAVAAEKALSSGLANRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEHGE
FWPNLRESDFHYIGKELGEGYNFNVPLNKTGMTNADYIAIFQQILLPMAYEFQPDLIIVS
AGYDAALGCPEGEMLITPACYSHLLSSLLSLANGKVAVVLEGGYCLKSLAESAALTLRTL
LGDPCPILQTLDLPSLSIRDTILNVIYAHKPYWKCYQYQETHSINSVTHNKEEITNQHVI
MVTYKGSEVKLDKYDTRNCYPVQSKEILEVVEKKLNELIQLTNLHKAPQKVCIVYDEKMQ
KHCNISDNSHPEKPNRISSIYKNHEEHGLLQRCHLLQGRSATIEELSLVHSIDHIDDIKR
TSTLKFKELQKQASDYNSVYLHSETWSSACISAGSLLQVVDAVLNGECQSGVAIVRPPGH
HAEKDIACGFCIFNNIAVAAMYAVQFHHVKRVLIVDWDVHHGNGTQSIFEEDPKILYISV
HRYDNGSFFPNSKLANYTSTGLNAGEGFNVNIPWNKKGMGDAEYIAAFQQVVMPIAYQFN
PELVLISAGFDACIGDTLGGCLVSPELYGHLTHWLSSLANGRIILSLEGGYNINSISHAM
TMCTKALLGDPLPMLDPDLIPCTSAINSINNVLKIHKKFWPNLQYGMSLPKEKLLPKFKT
KPNKREEQRKNADKLKQMEPKIALEGIESEKLDLNLAIDKNCLNLVTDEEISKLTCEVEN
IKIKNFELHAMKSEAVEAKRNPELKPSEAKNLNAISQSVQKCVNETQQSRGSQQGNSDIR
EDRDDEGAASSQSETRPLTLSEYLSDNLQALTAGEMFAIVPLQDCPHLYTVNEVPPGGID
VTTPCVECASIEENWICLQCYTVHCARNINQHAMQHAEEFEHPITLSFSDISVWCYGCEA
YVDNPRLYAARNAAHQSKFNEELPWTYSESA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgactgagtccacggtgaatctggatctatttactgctgctaaacaactagcagacagt
gagattgaactgataaaagtgattgagaattctaccaagtgtcaaagaactgcaacaaat
atgcttacaaatgcaaagaaaacaaagaaacctggaaaatcaaaaaatgctcgtccatca
gctgcgctattggctgccaaacaagaggcagcaaaacgacagctattatcagataagaaa
tccaacaactttgtaccggacatatatcagaaagcaattgattcatataaaatgatacga
aagcagactggtcttgtatttgatcgaagcatggctgagcatgagtgcatctgggatcca
aattatcccgagtgcccggccagatttacacaagttttgcaaaggtgtgaggagctagac
ctggtgcaaaggtgtaaactcattgaaccgagacttgccacggagaatgaacttctgact
aagcacagtcagaaacagattaatattttgaagtcaacggatggttctacggattctgaa
catttggagttgctatcgtccaagtacgattgcgtctatatccatccgtctacatataga
ttatctttattagccgtgggttcaacgattaatttagtagaaagtgtttgtaaaagcgag
atacagaatggcatggctattatcagaccacctggtcatcatgcaatgaaatcggaatac
tgcggttactgcttcttcaacaatgtagctgtggcagcagaaaaagctctgagttctggt
ttggcaaataggattttaattgtagattgggacgttcatcatggacaagcaacgcaacaa
atgttttataatgatccacgtgtggtttatttttcaatacaccgttatgaacatggcgaa
ttttggcccaatttaagagaatccgattttcattatattgggaaggaactcggagaaggt
tataacttcaatgtacctttaaataaaaccggcatgactaatgctgattacatcgccatc
ttccagcaaattttattgccaatggcttacgaatttcaaccggatttgataatagtatca
gcgggttacgatgcagctctgggttgtccagagggtgaaatgttaataactccagcatgt
tattcacatttactatcgtcattattaagtttggcaaatggaaaagttgctgtagtttta
gagggtggttattgtctgaaatcattagcagaaagtgcagcattgactttaagaacgtta
ttaggagatccctgtccgattttgcaaacacttgatttaccatcattaagtatacgtgat
actatcctaaatgtaatctacgcacataaaccatactggaaatgttatcaatatcaagaa
acacacagcataaatagtgtaacacataataaagaggaaattactaatcaacatgtaatt
atggttacatacaaaggcagtgaagttaaattagacaagtatgacactcgaaattgttat
cctgtacaaagcaaagaaatattggaggtcgtagagaaaaaattgaatgaattaatacaa
ttaacaaacttacataaagcacctcagaaagtatgtattgtctatgatgaaaagatgcaa
aagcattgcaacatttctgacaattctcatccagagaaaccaaatcgcatttccagcatt
tataagaatcatgaagaacatggcttgttacagcgatgccatttattacaaggaagaagt
gcaacgatagaagaattatccttggttcattcaatagaccatattgatgacatcaaaaga
acatcgaccttaaaattcaaggaattgcaaaagcaagcctcagattacaattctgtttat
cttcattctgaaacatggtcgagtgcttgcatatctgctggctctcttttacaagtagtg
gacgctgttttgaatggggagtgccaatccggagtagccatcgtaaggccgcctggtcac
catgctgaaaaagatattgcatgtggtttttgcatatttaataatattgctgtagctgca
atgtatgctgtacaatttcaccatgtaaagagggtgctgatagtagattgggatgtgcat
catggaaatggaacgcaatctattttcgaagaagatccaaaaatcctttatatctccgtt
catcgttacgataatggcagcttctttccaaattctaagctcgctaattatacgagtact
ggcttaaacgcgggcgaaggattcaatgtaaacataccgtggaacaaaaaaggaatggga
gatgctgaatacatagcagctttccagcaagttgtgatgcccatcgcttatcaatttaat
ccagaactagtcttgatttcggccggatttgatgcttgcattggcgatacacttggaggt
tgtctcgtaagtccagaactctacggccatttgacccattggttgtcatctctggccaat
ggtcgtataatcctaagtctcgaaggaggttacaacatcaactctatctctcacgcgatg
accatgtgtacaaaggcactcttgggagatcctttaccaatgctggatcctgatctcatt
ccttgcactagcgcgatcaattccatcaataacgtactgaagattcacaagaagttctgg
cctaacctacagtatggaatgtctttaccaaaagagaaactacttcccaaatttaagaca
aaacctaacaaacgtgaagagcaaagaaaaaatgcggataaattgaaacaaatggaacca
aagatcgccttagagggaattgagagcgaaaaattagatttgaacctggcgattgataag
aattgtttaaatctagtgacagacgaggaaatttcgaagttaacgtgcgaagtggagaat
attaaaataaaaaatttcgagttacatgcaatgaaaagcgaagcggtcgaagcgaaaaga
aatcctgaattgaaaccaagcgaagcaaaaaatttgaatgcaatttcacaaagtgtacaa
aaatgcgtgaacgagacgcagcaatcaagaggcagccagcaaggcaattctgacatacgt
gaggatcgcgatgatgaaggcgcagcatcttcacaatctgagacacgacccttaactctt
tcggaatatctctctgacaatctgcaggctctgacagcaggagaaatgtttgcaatcgtg
cctctgcaagattgtccacatctgtacacagtcaacgaggttcctccaggtggaattgac
gtaactacaccgtgtgtcgaatgtgccagtattgaagagaattggatttgcttgcagtgc
tatactgtgcattgcgcccgtaatattaatcagcatgcgatgcagcatgcagaggagttt
gagcatcccatcacgctcagtttcagcgatatttctgtctggtgctatggttgcgaagcc
tatgtcgataatcctcgattatatgcggcaagaaacgcagcccaccaaagcaagttcaat
gaagaacttccctggacttatagcgaaagtgcatga
DBGET
integrated database retrieval system
