Cyphomyrmex costatus: 108777214
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Entry
108777214 CDS
T11118
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108777214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccoa03041
]
108777214
03009 Ribosome biogenesis [BR:
ccoa03009
]
108777214
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108777214
Spliceosome [BR:
ccoa03041
]
Complex A
U2 snRNP components
U2 related factors
108777214
Complex B
108777214
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108777214
Ribosome biogenesis [BR:
ccoa03009
]
Eukaryotic type
90S particles
Helicases
108777214
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
108777214
NCBI-ProteinID:
XP_018399543
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRRIEVMDPYVKRKAADSNVSNNVTTPGTTAAKSQVQFNPYTMLPYTPRYYELYKKRI
TLPVFEYRTDFMRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGSKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIPGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEPAPPTKTNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLELTQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaggattgaggtcatggatccgtacgtcaaaaggaaagccgcagacagt
aatgtttccaacaatgtaacaaccccagggacaacggcagcaaaaagccaagtacagttc
aatccatatactatgctgccatacacgccgagatactatgaactttacaagaaaaggata
actttacctgtgtttgagtatcgtactgattttatgagactgttgtcccagcatcaatgc
attgttcttgttggagagacaggctctggcaaaactacacagataccacaatggtgcgtg
gagtattcaagaagtattggatccaaaggagttgcctgtacacagcccagaagagtagct
gcaatgagtgttgctcaaagagtttcagaagagatggatgttgccttaggtcaagaagta
ggatacagcatccgttttgaagattgtagttcgccgaggactgtgttgaagtacatgacc
gatggtatgttgcttcgggaaggtatgtctgatcccatgttggacgcctatcaagtgata
ctgctggatgaagctcatgaaagaactttagctactgacttgctgatgggtgttttgaaa
gaagtgatcaagcagagaccagatttgaaacttgtgattatgagtgctactttggacgct
ggaaagtttcagcaatattttgacaatgctccacttatgaatgtgcctggtagaacgcat
ccagtcgagatattttatacacctgagccggagagggactacttggaagcagcaataaga
actgttattcagatacagatgtgtgaagaaattcctggtgatcttttgctatttttaacc
ggtcaagaagaaattgaagaagcttgcaaaagaataaaaagagaaatggacaacttggga
cctgaagttggtgaattaaaatgcataccattgtactcaacactgccgccgaatcttcaa
cagagaatatttgaacctgctccgcctaccaaaactaacggtgctattggtcgcaaagtc
gtcgtttcgaccaatattgcagagacatcattgactatcgatggagttgtctttgttata
gatcctggttttgccaagcaaaaagtatacaatcctaggattcgtgttgaatctcttttg
gtgtcgcctattagtaaggcttcggcacaacagagagccggtcgtgctggtagaacaagg
cctggaaaatgtttcagattatatacggaaaaggcgtacaaaaatgagatgcaagataat
acctatcctgagattttgcgttctaatcttggaagcgttgtattgcaattgaagaaactt
ggcatcgatgatttggtacattttgattttatggatccacctgcgcccgaaactctgatg
agagctttagaacttttgaattatctagcagctctggatgatgatggaaacttaacagat
cttggcgcagtaatggcggaatttccattggatccccaattagcaaagatgcttatagct
tcttgcaatcataattgcagtaatgagatactcagcattactgctatgctttcagtccca
cagtgctttgtgaggccgaatgaatcgaaaaaagccgcagatgatgcaaaaatgaaattt
gcacacatcgatggtgatcatctaacactattgaatgtatatcattcttttaaacaacat
atggacgatgttcaatggtgttacgataattatgtaaattatcgatcattaaagagcgga
gataacgtaagacaacagttaagcagaataatggatagatttgtattaaaacgtacttcg
acggactttaattcaaaagattattacattaacattaggaaagctcttgttaacggtttc
ttcatgcaggtagcgcatttagaaagaacgggacattacctgactatcaaagataatcag
gtagtacaacttcatccgagcagttgtctcgatcacaaaccagaatgggttatttataat
gaatttgtgcttactactaaaaattatatcagaacagttactgatattaaacctgattgg
ttactcatgatagcaccacaatattacgacctacaaaattttccacaatgtgaagcaaaa
agacaactcgagctcactcaagcgaaattagattcaaaacagtatcaggaaggcttctaa
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