Cyphomyrmex costatus: 108777531
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Entry
108777531 CDS
T11118
Name
(RefSeq) transcription factor Sox-19b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ccoa Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccoa03000
]
108777531
Transcription factors [BR:
ccoa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108777531
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
108777531
NCBI-ProteinID:
XP_018399949
LinkDB
All DBs
Position
Unknown
AA seq
390 aa
AA seq
DB search
MRAGGNMCDGSFTETLRSMQGMTGTSPPGSAGVSHMGVGLMGGSSPLGSAGKKVPVEHIK
RPMNAFMVWSRLQRRKIAQENPKMHNSEISKRLGAEWKLLTEDEKRPFIDQAKRLRAQHM
KEHPDYKYRPRRKPKTLRKEGYPYSIPYPSVPMDALRAGMAGSMGQAAMGSYYTPAAAYG
SLSAASMAVAAAQQSAGLAMSTLSSPARIVTMDAMKYSMETDKYRAAYMPPSTLAMSMYP
DPKYLDSSNPKTYLDRTYLDAKAYFEQSKLYMDQKPAIGEYNRPSYEPNKLYEESSPNSV
VGGNGPTRSPPAESPDTSKQHERTEQGSSSASSTSTSSAASPGANLPSTYYPASVQASGL
LTPQMAQAYGGYQMAPTSGSESFRRPLVIL
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagagccggcggcaacatgtgcgacggctctttcacagaaaccctgcgtagtatgcaa
gggatgacgggaacgtcaccaccgggtagtgccggtgtcagtcacatgggggtcggcctc
atgggggggagcagtccgctcggctcagcaggcaagaaggtgccagtggaacacatcaaa
cggccaatgaacgctttcatggtttggtcgcggctacagcggcggaagattgcacaagag
aatccgaaaatgcacaatagcgaaatctccaagcgactaggagcagaatggaagctcctg
acggaggatgaaaagcgcccgttcatcgatcaggcgaagaggttacgtgcacaacacatg
aaagaacatcctgattataaatacagaccacgaaggaaacccaaaactttgcgaaaagaa
ggttatccttacagcattccgtacccaagtgttcccatggacgctcttcgagcaggaatg
gccggtagcatgggacaggctgcaatgggctcctattacacccccgccgcggcctacggc
tcgctctcagcggctagcatggccgtagcagcggcacaacaatcagctggtctcgccatg
tctacgttatcttcacccgctcgaatagtcacgatggacgccatgaagtactctatggag
actgataaatatcgcgctgcttatatgccgcccagcactctagcaatgagcatgtatcca
gatcctaaatacttggattcttccaatcctaagacttatctggaccgtacatacttagac
gcgaaggcatacttcgagcagtcgaagctatacatggatcagaaacctgctattggagaa
tacaatcggcccagctacgagcccaacaaactctacgaggagtccagcccaaacagtgtc
gtcggcggaaacggacccacaagatcaccgcccgcggaatcgccagacacaagcaagcaa
cacgaaaggacagaacaaggctcgtccagcgcgagttcgacatcgacatcatcggctgcg
agtcccggcgcgaatttgccgtcaacgtattatcccgcatcagttcaagctagcggtctg
ctgactccgcaaatggctcaagcatacggtggatatcaaatggcaccaacatcgggaagc
gaatcctttcggcgaccgttggtcatcttgtga
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