KEGG   Cyphomyrmex costatus: 108778402
Entry
108778402         CDS       T11118                                 
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
ccoa  Cyphomyrmex costatus
Pathway
ccoa03013  Nucleocytoplasmic transport
ccoa04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:ccoa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108778402
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    108778402
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccoa03019]
    108778402
   04131 Membrane trafficking [BR:ccoa04131]
    108778402
Messenger RNA biogenesis [BR:ccoa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108778402
Membrane trafficking [BR:ccoa04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    108778402
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 108778402
NCBI-ProteinID: XP_018401077
UniProt: A0A195CBC7
LinkDB
Position
Unknown
AA seq 405 aa
MYEAHSINAEHKDLIHDIAYDYYGERMATCSSDQFVKVWDEDEHGNWHLTASWKAHSGSV
WKVTWAHPEFGQVLATCSFDRTAAVWEEIVGEGSGPEARGSKHWIKRTNLVDSRTSVTDV
KFAPKTLGLLLATCSADGFIRIYEAPDIMNLSQWTLQHDINCKLSCSCLTWNPSLSRLHP
PMIAVGSDDPNPTLGAKIFIYEYSENSRRWVKAETLSSITDAVYDIAFAPNLGRNFHTLA
IATKDVRIVTLKPTDESTQTGVSHFETNVVAQFDDHYCTVWRVSWNCMGTILASSGDDGC
VRLWKDNFINHWKCISVLKGDGVPAQGAETPVVATPPSSSTPAQQMPSTTRTVSVATVTA
EKPTATVVCSNKWQAPVIKGRFSKSVWLGNPSEPTPPLLPIIAKK
NT seq 1218 nt   +upstreamnt  +downstreamnt
atgtacgaggcgcacagtatcaatgcagagcacaaggatctcatacacgatatcgcctac
gattactatggggaacgaatggcgacgtgctccagtgatcaatttgtaaaggtttgggat
gaagacgagcatggaaactggcatctaactgcttcttggaaggctcacagtggatcagtg
tggaaagtcacttgggcacatccagaatttggccaagttcttgctacatgttcatttgat
cgcactgctgctgtctgggaggaaattgttggcgaaggttctgggccagaagctcgtggt
agcaaacattggattaaaaggacaaatttagttgattcacgtacttctgtcacagatgta
aagtttgcaccaaagactttaggccttcttctggctacttgtagcgcagatggattcatt
cggatatatgaagcaccagatatcatgaatttaagccagtggacgttacagcatgatatt
aactgtaaactttcgtgtagttgtcttacatggaatccatctctctccagactacatcca
cctatgatagcagttggtagtgacgatccaaatcctacacttggagcaaaaatctttatt
tacgaatattctgagaacagtaggcgttgggtgaaggccgagacattgtcaagcattacg
gatgccgtttacgacattgcgtttgctcctaatctaggcagaaatttccacacattggcc
atagctacaaaagatgtacggatagtcactttaaaaccgactgacgagagtacacagact
ggtgtatcacattttgaaacaaatgtagtcgcacagttcgatgatcattactgtaccgtc
tggcgtgttagctggaactgtatgggaacgattttagcaagttccggtgatgatggttgc
gttcgattgtggaaggacaatttcattaaccattggaaatgcatctctgttctcaaagga
gatggcgttccagctcaaggtgctgaaactccggtcgtagcgactccgccgagttcgtct
acaccagctcaacagatgccatctaccaccaggactgtaagtgtggccacggtcacggcg
gagaaaccgacggctaccgtcgtgtgcagtaacaagtggcaagcgcccgttataaaggga
cgctttagtaaatccgtgtggctaggtaatcctagcgagccgacaccgccattgttgccg
attatagcaaaaaaataa

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