KEGG   Cyphomyrmex costatus: 108778677
Entry
108778677         CDS       T11118                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
ccoa  Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:ccoa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccoa03041]
    108778677
Spliceosome [BR:ccoa03041]
 Complex B
  Other components
   Complex B specific factors
    108778677
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_EML WD40_Gbeta ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd LisH_TPL Beta-prop_ACSF4 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_Nup120_160 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_DCAF4 Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_WDR35_TULP_N Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_IP5PC_F PROPPIN WD40_like WD_LRWD1 VPS8_N DUF7165 LisH_WDR26 LisH_PAC1 zf_topless
Other DBs
NCBI-GeneID: 108778677
NCBI-ProteinID: XP_018401419
LinkDB
Position
Unknown
AA seq 510 aa
MSIEIESADVIRLIQQYLKESNLVKTLQTLQEETGVSLNTVDSVDGFVADINNGHWDTVL
KAIQSLKLPDKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIMMKQQEPERYIHLENL
LARSYFDPREAYPDGNTKEKRRAYIATALAGEVSVVPSSRLLALLGQALKWQQHQGLLPP
GTTIDLFRGKAAVRDQEDEKYPTQLSKQIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMEQAVLSMSFSRDSEMLAGGGQDGKIKVWRVQSGQCLR
RFEKAHSKGVTCLQFSRDNSQILSASFDTTIRVHGLKSGKTLKEFRGHSSFVNEVVFSSD
GHNIISASSDGTVKIWSLKTTECIGTYKSLGAADLTVNSIHTLPRNSEHFVVCNRSNTVV
IMNMQGQIVRSFSSGKREGGDFVTTVVSPRGEFIYCVGEDLVLYCFSTSSGKLERTLNIH
EKDVIGLAHHPHQNLLCSYSEDGLLKLWKP
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgtcgatcgaaatagagtctgctgatgtgatccgattgatacagcagtatcttaaggag
tcaaaccttgtcaagacgctgcaaaccttacaggaggaaacaggtgtatcgctgaatact
gtagatagtgtggatggatttgttgccgatataaataatggccattgggacacagttttg
aaagctatacagtcattaaaattaccggataagaaactcatagatttgtacgaacaggtt
gttttagagttaattgaactacgagaattgggcgcagcacgttccttattaagacagact
gatcccatgattatgatgaagcaacaagaacccgagagatatattcatttagagaatcta
cttgcacgttcatatttcgatccacgcgaggcatatcccgatggaaacacgaaggaaaaa
cgaagagcatatatagccactgctctcgctggcgaagtatcagtagtaccatctagtaga
ttactcgctctgttgggacaagcgttaaagtggcagcaacatcagggtttgttaccacct
ggcaccacgatagacttgttccgaggaaaagcggcggttcgtgatcaagaagacgagaaa
tatccgacgcaattatcgaaacaaatcaaatttggtcagaaatcacacgtggagtgcgcg
cgtttctcgcccgatggccaatatttggtgaccggttcagtggatggttttatcgaggtg
tggaactttacgactggtaaaattagaaaagacttgaaataccaagcgcaagacaacttt
atgatgatggaacaagcagtcctatcaatgtcgtttagtcgtgacagtgagatgttggca
ggtggtggtcaggacggtaaaattaaggtttggagggtacaaagtggacagtgcttgagg
agattcgagaaggcgcattcgaaaggtgtaacttgcttacagtttagtagagacaacagc
caaatattgtcagcctcgttcgatactactataagggtacacggccttaagtctggaaag
actctcaaggaattccgcggtcactcttcgtttgttaacgaagtcgttttttcctcagac
ggtcataatattatcagcgcgtcgtcggatggaaccgtgaaaatttggagcttgaagacc
accgaatgcataggcacgtataaatcattgggagccgctgatctcacagtaaacagtata
catacccttcctcgaaattcagagcacttcgtcgtgtgcaatcgttctaacactgtagta
attatgaatatgcaagggcaaatagtgagatcattttccagcggtaaacgagagggaggt
gatttcgtaactacagtggtgagtccgcgtggcgagtttatttattgcgtcggtgaagat
cttgtactgtactgtttttccacgtcgtcaggaaaactggaaagaacgctcaatatacac
gaaaaggatgtaattggcttggcgcatcatccccatcaaaatttattatgttcttacagc
gaggacggtctgctaaaactgtggaaaccataa

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