Cyphomyrmex costatus: 108778853
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Entry
108778853 CDS
T11118
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ccoa Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccoa03021
]
108778853
03036 Chromosome and associated proteins [BR:
ccoa03036
]
108778853
Transcription machinery [BR:
ccoa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108778853
Chromosome and associated proteins [BR:
ccoa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
108778853
SLIK complex
108778853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
108778853
NCBI-ProteinID:
XP_018401652
LinkDB
All DBs
Position
Unknown
AA seq
1804 aa
AA seq
DB search
MQKTLDSESGKESGSDTENESKSDSSSSASNSGSGSGSESDSSSSSGSGSGSGSDSEKSE
KSDAPAAQSDSFQSKGSNHSTEAKFRVKHESSREWDENPDIYGIRRSGRSRKEPDRLATN
RESDSDSRKKFKKKSSHNSWNSESSDSESDETEIRRPPPSKSLNRRAAQKLKEKARIRKK
RISDSSENSSFDSDDNRRQINRRAGTAVSYKEESEEGTDSEDLVEVDESNAASTEPDNAE
TIEQILGQRMGKKGVTGNITTIYAVEDNGDPNPEDLSNLETEVQYWIKWKGWSHIHNTWE
SEESLKTQKVKGLKKLDNFIKRERAIEYTREHAEPEELDYLECQLELKQDLLKSYNNVER
IIADYKKPDSVYPDYFCKWENLSYAEATWEDGILIVKKWPEKIKEFCDREDSKRTPSKHC
KVLKSRPKFYQLNEQPAYMGKEKDLILRDYQMDGLNWLIHSWCKENSVILADEMGLGKTI
QTICFLYYLFHTQHLHGPFLLVVPLSTMTSWQREMSQWAPDLNFVTYLGDINSRNVIREY
EWCYQDSKRLKFNVILTTYEIVLKDKTFLGALNWAVLLVDEAHRLKNDDSLLYKALTEFH
TNHRLLITGTPLQNSLKELWALLHFIMPAKFASWEEFEKQHDNAAQKGYSKLHKQLEPFI
LRRVKKDVEKSLPAKVEQILRVEMTSVQKQYYKWILTKNYEALRKGVKGSTTTFLNIVIE
LKKCCNHAFLTKPIEAEREKTNEDYLQQLIRGSGKLVLLDKLLVRLRDTGHRVLIFSQMV
RMLDILGEYLQRRHFPFQRLDGSIKGELRKQALDHFNADGSQDFCFLLSTRAGGLGINLA
TADTVIIFDSDWNPQNDLQAQARAHRIGQKNKVNIYRLVTKKSVEEEIVERAKQKMVLDH
LVIQRMDTTGRTVLDKKNAGTNSNPFNKEDLNAILKFGAEDLFKDEEDGDEEPACDIDEI
LRRAETRDEGPTTVGDELLSAFKVASFKTAFEEDLEPINQPNDNDDESKDWAEIIPENFR
RKVEEEEKSKEMEDLYLPPRSRKTLQQLNQSEGKSKKRKRVQDDSEDGEESGSDAEGSDD
DRPKKRGRPRVTPRENIKSFTDVEIRRFIKSYKKFPAPLKRLEDIAADADLQEKPMTELR
FLGEQLMSRCDACLVEFENTAKENKGGEEEGKGPGRKRGRGPTFKIGGVMVNAKSFSAAV
KELEPLEQALPSDPEQRANWHLDIKLKPANFECEWTSEDDARLLKGIYQHGMGSWEAIKT
DTNLKLGDKILPNGNKVQLKRVNARAEYLLKILKKQIDLKLGVTRIRKPRKPKEMKMAIT
KEIVEDNDSSGDENKKSKSKIDKSAVKKEDENIAKKDIKEEIDDVPDEKKKDKKVKKEKK
DNKKVKKNKQAAGPMHFTANNEPRAVEVIGELDPPVFDECKEKMRPVKKALKSLDTPDMS
LSEEERVARARRSLYQIGNHIDTCLAEYKNPEQIKEWKSNLWYFASKFTTFKAKKLYKMY
KNLAKKKDSDNGGATASPDKKEDTSNTAKKHNEKSSHDRHFDKQQQGDSSNKDSRIMKRK
ADDIEENSNSSMQSKKHLSNISAVSSNISSTSAVTIGAITITPITSTPNSTSNTTNSADT
SRHKEQKESKHKDMKRDRDRDRDRDRGHDRDRLSMNKDDRIRRDGGYNMGHYSGSRDDDH
WLSRDGRDMRDGRYGFGDHKRDRFDLYGRMSGGYHRDRDRDRDRGMHMNDKRNDYYRYSS
GPHSYGYGPGGYGGSSGGYPPSDIASSHFRSRGYAGDGYSNDWRPNKDYRRDYDRRPPPP
NANS
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaacattagactccgaatctggtaaggaatccggatctgatactgaaaatgag
agcaaaagcgatagctcctcttccgccagcaacagcggctcaggatctggatctgaaagc
gactctagctcctcgagcggttctggttccggatcgggctccgactcggaaaagtcggag
aagtcggatgcacctgctgcacaaagcgatagcttccagagcaaaggctcgaatcacagc
accgaagcaaagtttagagttaaacatgagtctagtcgcgagtgggacgagaatcctgac
atatacggcattaggaggtccgggcgttccaggaaggaacctgataggctcgcaacgaat
cgcgagagcgacagtgatagtcgcaaaaagtttaagaagaaaagttcacacaattcgtgg
aattcagaaagttcagattcggaatctgacgaaactgagattcgtagacctccacctagc
aaatccttgaacagacgcgcggcgcaaaaactaaaagagaaagccagaatacgaaagaag
cgtatctctgattcttctgaaaattcttcctttgacagtgatgataatagaaggcaaatt
aatagacgggcaggcacggcagttagttacaaagaggaaagtgaagaaggtactgatagc
gaggatttggttgaagttgacgaatcgaacgctgcgtcaacagagccagacaatgcggaa
actattgaacaaattttgggacagaggatgggcaagaaaggagttaccggtaatataacg
acaatctacgctgttgaagacaacggcgatcctaatccagaggatctaagtaacctggaa
actgaagtacaatactggatcaaatggaaaggctggtctcacatacataatacatgggaa
tcagaggaatctttaaaaacacaaaaagtaaaaggattgaaaaagttagacaattttatt
aaacgtgaacgtgcaattgaatatacgagagaacacgctgaaccagaagagttggattat
ttggaatgtcaattggagcttaaacaagatcttctgaaaagttacaacaatgtcgagagg
attattgctgattataagaaaccagattcggtatatcccgattatttctgtaaatgggaa
aatttgtcatacgccgaggccacatgggaagatggaattctaatagtaaaaaaatggcca
gagaaaataaaggaattttgtgacagagaggattccaaaagaacaccgagcaaacattgc
aaagttctcaaatctagacctaagttttatcaattgaatgaacaacctgcttacatgggt
aaggaaaaagatttaatattgagagattatcaaatggatggacttaattggttgatacat
tcttggtgcaaggaaaatagtgttatattagccgatgaaatgggtctcggcaaaacaatc
caaacaatatgcttcctttactatttatttcacacacaacaccttcacggaccattttta
ttagtagttcctctgtctactatgacttcctggcaaagagagatgtctcaatgggcacct
gatctaaatttcgtcacttacttgggcgacatcaattctcgtaatgttattagggaatac
gaatggtgctaccaggattcaaagagactaaagttcaacgttattcttacgacgtatgag
atagtacttaaagataaaacatttttaggtgccttaaattgggcggtattgctagtagac
gaagctcatcgattgaagaatgacgattctttattatataaagcacttaccgaatttcac
accaatcatcgtttattaattactggtactccgttacagaacagcttgaaggagctgtgg
gccttattacatttcattatgcctgcaaaatttgcttcttgggaagagtttgaaaagcaa
cacgacaatgctgcacagaagggatactccaagttgcacaagcaattagagccatttatt
ctacgccgagttaagaaagatgtcgagaaatctttgcctgctaaagtcgagcagatctta
cgagtagaaatgacgtccgtgcaaaaacaatattacaagtggatattgacaaaaaattat
gaagcattgcgaaaaggcgtaaaaggatctactacgacattcttgaacattgttattgaa
ttgaaaaagtgctgcaatcacgcctttcttacgaaaccgattgaggccgaaagggaaaaa
actaatgaagattatttgcaacaattaattcgtggttctggcaaattagtgcttctagat
aaattactagtgagattgcgcgacacgggacacagagtactaatattcagtcaaatggtc
agaatgttggatattcttggcgaatatctacaaaggaggcatttcccattccaaagatta
gatggaagtataaaaggggaattacgaaaacaagcgttggatcatttcaatgctgatgga
tcacaagacttttgttttctattatcgacgcgagcaggtggtctcggtattaatcttgcc
actgcggacactgtgataatttttgattctgattggaatccgcaaaatgatttgcaggca
caagccagagcgcatcgaataggacaaaagaataaggtaaatatctatcgactggttact
aaaaagtcagtcgaggaagaaatcgttgaacgcgcgaagcaaaaaatggtcttagaccat
ttagtaatacagcgaatggatacaaccggaaggacagtgttagataaaaagaacgcggga
accaatagtaatccatttaataaagaagatttaaatgctattttaaaatttggcgccgaa
gatctgtttaaagatgaagaagatggagatgaggaaccagcttgtgatatcgacgaaata
ttaagaagagctgaaacaagggacgaaggaccgacaacagttggcgatgaattgttgtcc
gccttcaaagttgccagttttaaaacagcatttgaagaggatttggaacctattaatcag
ccaaatgataacgatgatgaaagtaaagattgggctgaaatcattccggaaaattttcga
aggaaggtggaggaggaggaaaaatccaaagaaatggaggatctttatttaccaccgaga
agtcgtaaaactcttcagcagctcaatcagagcgaagggaaaagcaaaaagcgaaaaaga
gtacaagatgacagtgaagatggcgaagaatcgggtagcgatgcggaaggaagcgacgat
gatagacctaagaaaagaggtagaccgagagtcacgccgcgtgagaatatcaagagcttc
actgatgttgagatacgacgattcatcaagagttataaaaagttcccagcacctttaaaa
cgattggaagatattgcagctgacgctgacttacaagagaaaccgatgacggaattgcgc
ttcttgggcgagcaattgatgtctagatgtgacgcatgtttggtagaatttgagaatacc
gcgaaagagaataaaggtggtgaagaagaaggcaaaggaccgggtcgtaaaaggggacga
ggacctacttttaagataggcggtgtaatggtgaacgcaaagtcattctccgccgctgtc
aaagaactcgagcctttagaacaagctttgccatctgatcctgaacaacgtgctaattgg
catctcgacattaaattgaaaccagccaattttgaatgcgaatggacttccgaggatgat
gctagactgttaaagggtatataccagcatggcatgggctcatgggaggcgataaaaaca
gatactaatttgaaactcggcgataagattcttcctaatggcaataaagtacaactcaaa
cgtgtgaatgcacgtgcagaatatctcttgaagattttaaagaagcaaattgatctaaag
ttaggagtgacgcgaataagaaaaccaaggaagcccaaagagatgaaaatggcaattacc
aaagaaattgtagaagataacgatagctctggcgacgaaaataaaaaatcaaaatccaaa
attgacaaatctgcagttaaaaaagaagatgaaaacattgcaaaaaaagatatcaaagaa
gaaatcgatgatgtacctgatgaaaagaaaaaagataaaaaagttaagaaggagaaaaaa
gataataaaaaagtaaaaaagaataaacaagctgcaggtcctatgcattttactgcaaat
aatgaaccgagagctgtcgaagtaatcggtgaattagatccgccagtatttgatgagtgc
aaagagaagatgagaccagtaaagaaagcattgaagtccttagacacaccagatatgtct
ctgagcgaggaggagcgagttgctcgcgcacgtcgaagtctttaccaaattgggaaccat
attgacacgtgtctggcggaatataaaaaccctgaacaaatcaaagaatggaaaagcaat
ctttggtactttgcttccaagtttacaacctttaaagcgaaaaagctttataaaatgtat
aagaatctagcaaaaaagaaagatagcgacaatggtggtgccacagctagtcccgataaa
aaagaggatacttctaatactgcaaagaaacacaatgaaaaatcgtctcacgatagacat
tttgacaagcaacaacagggagacagcagtaataaagatagcagaataatgaaacgtaaa
gctgatgatatcgaggaaaactcgaatagcagtatgcaaagtaagaaacatctctcaaat
atttccgctgtcagcagcaatatcagcagtacgtccgcagttactattggtgctattacg
attacgcctataacgtcaacgccaaattccacatcgaatactactaacagcgcagacaca
tcgcgacataaagagcaaaaagaatcgaagcataaagatatgaaaagagatagggatcgt
gatagagatagagataggggacacgacagagatagattaagtatgaacaaggatgataga
attcggagagacggtgggtacaatatgggtcattatagtggtagcagggacgacgatcat
tggttatccagagacgggagagatatgagagacggcaggtacggattcggagatcataaa
cgcgatcgctttgatctttatggtcgaatgtccggtggttatcacagagatagagatcga
gatcgagatcgtggaatgcatatgaacgacaaaagaaatgattattatcgatactcatcg
ggaccacacagttacggatatgggccaggtggctatggaggtagcagtggtggttatccg
ccctcggatattgcatcaagtcattttagaagtcgtggttacgcaggagatggttactcc
aatgattggcgaccgaacaaagattacaggcgagactacgatagaagaccaccgccacca
aacgccaactcctag
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integrated database retrieval system
