Cyphomyrmex costatus: 108779757
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Entry
108779757 CDS
T11118
Name
(RefSeq) uncharacterized protein LOC108779757 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108779757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccoa03000
]
108779757
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108779757
04121 Ubiquitin system [BR:
ccoa04121
]
108779757
Enzymes [BR:
ccoa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108779757
Transcription factors [BR:
ccoa03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108779757
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108779757
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108779757
Ubiquitin system [BR:
ccoa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108779757
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nup35_RRM_2
zf-C3HC4_2
zf-CCCH_2
zf-UDP
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
108779757
NCBI-ProteinID:
XP_018402746
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MSVLNQSGEDAVECPLCMEPLEVDDLNFFPCTCGYQICRFCWHRIRTDENGLCPACRKAY
SENPADFKPLTKEEIARLKAEKRLKDQQRKQRVTENRKHLANVRVVQKNLVFVVGLPMRL
ADADVLKKHEYFGKFGKIHKVVINQSTSYAGSQGPSASAYVTYQRQEDALRAIEAVNNIV
VDGRTIKTSLGTTKYCSHFMRNQACPKPDCMYLHDLGDQEASFTKEEMHQGKHQEYERKL
VQSLHAHASSVQRKPTPSPPVTGSIVRESGTVNSQTKEAWPSLQPGQTNSTQSSCKEISP
SAQTTSQHNNVTSGNGTVAQQSHMSSGVSTHQQNNNNNKDESVGVRRGKSNSESKAQAAR
NKHKNSQNKEKHGTRTTSRSESSSINMQNSSQSQITGQKDVRNFSADTNSEMLQKLGNKC
KMEQQQQQQPPSQQISNKTSKLVQLQPHEVNVNGAFQNGERLHSDSETDQQREGSTPAST
ISSTEDSNVNHQAEHLVESSEENSSGAVLLGSSPASTNSSQGANQLPPPGLHNGSQMQLN
HRSIFQADNNSFFSSNTFQKIPTTTSIPPNSLAANTNLDWTSTGVAAIPDSLPTVHSSED
WQAAFGFQPESSRTNHIIAKSSSTDSRVPFNSEGFADEEVYINAPYTAALTESSSSTFTS
NLLVNSPASKFMADYQQNSLQQRLNIQAQQTQENCEYIKQNGHATMEEIRNHCDAGSEVK
ADDDLGFDPFHETQKALAELLAEDEMQVQQQKMFQQQQLREREEQTRVQHQQTLANLNQQ
HFPQVAHIAHLQQQAQHLQNLQVLQSHSLLSRLPQNLLPSGAQSPAQGTVTATTLGQRSR
LPPPGFPGSTPNHMNSFGLGIPRPAPTNSALSGAQPPQPQSAYLPNGSPLLNTQSIGKCT
GDVYTLKDWCEINNQQQFHHQALHQKGWNNFGPIADWTSIDPAIVTSSRPLPFQTTSAWQ
FSHIHPSHVVTHNTQQEQNAPTQHWAMQPPPGFAAPSTTGQLNNPQPNTTAPPHTKLISA
GSEIESKLIAIKLRAN
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtattgaatcaaagcggcgaggacgcggtggaatgccctttgtgtatggagcca
ttggaggtggacgatctgaatttcttcccgtgcacctgtggatatcagatttgccgtttt
tgttggcacagaattcgtaccgatgagaacggcctgtgtcctgcgtgtcgaaaggcctat
tctgaaaatccggctgactttaaaccccttaccaaggaagaaatagcaagattaaaagcc
gagaagaggttgaaggatcaacaacggaagcaaagagttacagaaaatcggaaacatcta
gcaaatgtgagagtagtacaaaaaaatttagtgtttgtagtaggattaccaatgcggctg
gcagatgctgatgttttaaagaaacacgaatattttgggaaatttgggaagatacacaaa
gtcgtaattaaccagagtacttcctatgcagggtctcaaggccccagtgcttcggcttat
gttacttatcaacgtcaagaggatgcgctacgtgctatagaggctgtgaataacattgtt
gtggacggacggacaataaaaacatcattaggaacgacgaagtactgttcgcattttatg
cgtaaccaagcctgtccgaagccagattgcatgtacctgcatgatcttggggaccaggag
gcatcgtttacgaaggaggagatgcatcaaggaaaacatcaggagtacgagcggaagctt
gtacaatcgttacatgcacatgcgtcttcagttcaacggaaaccgacaccatcaccacca
gtaacaggtagtattgttagagaaagtggaactgtaaattcgcaaactaaagaggcatgg
ccgtcgttgcagccgggacagacaaatagtacacaaagcagttgtaaagaaatatcacca
tctgcgcaaacaacctcacaacacaataatgtaacaagcggaaacggcacggtagctcaa
caaagtcacatgtcctccggggtgtctacgcatcaacaaaacaacaacaacaacaaggat
gaaagtgtgggtgtgcggcggggtaaaagtaatagcgaaagtaaagcacaggcagctcgg
aacaaacataaaaatagtcaaaataaagagaagcacggtactcgtacgacatcgcgatct
gaatcaagctcaatcaacatgcaaaatagttcacagtcgcaaattactggacaaaaggac
gttagaaatttttctgctgatacgaacagtgaaatgttgcaaaaattgggtaacaagtgt
aaaatggaacaacagcaacaacagcagccaccgtcacaacaaattagcaacaaaacatca
aaattagttcaattacagcctcacgaagttaatgtaaatggtgcatttcaaaatggggaa
cgtctgcattcggacagtgaaaccgatcaacagcgtgaaggtagcacaccagcgagtacg
atctcgagcacggaagattcgaatgtaaatcaccaagctgagcacttagttgaatcaagc
gaagaaaatagtagtggtgctgttcttttgggttcgtctccagctagcacaaattcatca
caaggtgccaatcaactaccaccaccaggattacacaatggatctcaaatgcaactcaac
catcggtcgatctttcaggcggacaataacagtttcttcagttcaaatactttccagaaa
ataccaactacaacctcgataccaccaaattccctcgcagcaaacacaaatctagattgg
acaagcacgggagtagctgcgatacccgattccttaccgacagttcattctagtgaagat
tggcaagccgcttttggctttcagcctgaatcgtctcgaacgaatcatattatagcaaaa
tctagttcaactgattcgagagtaccgttcaactctgagggttttgcagatgaagaggtt
tatataaatgcaccttacaccgctgcactcacagaatcatcatctagtaccttcacatct
aatttacttgtaaattcacccgcatctaagtttatggcagattatcaacaaaattcatta
caacaaaggcttaatatacaggcgcagcaaactcaagaaaattgtgagtacataaaacaa
aacggccacgctacaatggaagaaattcggaatcattgtgatgcaggctcagaagtgaaa
gcggacgatgatttaggttttgatcctttccacgaaacgcagaaagcattagcagaactt
ttagcagaagatgaaatgcaggtgcaacagcagaagatgttccagcaacaacaactaaga
gaacgagaggagcaaactagggtgcagcatcaacaaactctcgctaaccttaatcaacaa
cactttccacaagttgctcacatagcacacttgcagcaacaagcccaacacttgcaaaat
ctacaagtgcttcagtcgcattccctcttgtcccgtcttccgcaaaatctgttaccaagc
ggtgcgcagagccctgcacagggtactgtaacggctactactttaggacaacgcagtcga
ctcccgccacctggttttcctggttctacgccaaatcacatgaattcatttggtctcggt
ataccgcgaccagcaccaacgaatagtgccctctctggagcgcagccacctcaaccacag
agtgcgtaccttccaaatggaagtccacttctcaacacgcaaagcatcggcaaatgcacg
ggagacgtttatactttgaaggattggtgcgaaattaataatcaacagcaatttcaccat
caagcgttacaccagaaaggatggaacaatttcggacctatcgcagattggacttcgatt
gatccagctatagtcacatcatctagacctcttccattccaaactactagtgcttggcaa
ttttcccacattcatccttctcatgttgtaactcacaacacgcaacaggaacagaacgca
cctactcagcattgggcgatgcaaccacctcctggctttgctgcaccctcgactacagga
caattgaataatccgcagccgaatacaaccgcaccaccgcacaccaagctcatctctgca
ggatcggaaatcgaaagtaagttaatcgcgatcaagctccgtgcaaactaa
DBGET
integrated database retrieval system
