Cyphomyrmex costatus: 108779856
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Entry
108779856 CDS
T11118
Name
(RefSeq) nuclear pore complex protein DDB_G0274915-like isoform X1
KO
K18716
nucleoporin NUP42
Organism
ccoa Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108779856
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108779856
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH_4
zf_CCCH_4
zf-CCCH
Torus
Nucleoporin_FG
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
108779856
NCBI-ProteinID:
XP_018402874
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MVICKYYRQGNCRYGQYCQFEHINHFAGNTKTEDDIVILVAKEVLFAERGGQWLLSCFAP
LKERPCIPGMEDLSPEEVRWETYNAQKNGMGEQAKLHFQQLCQEMKAKREVLKNPTRETM
TMLKKILGSGQKVSQLGLVNNTSANNVFGNTTYNVQNNNPFGGGGFTSSNNTSSIFGKSN
NNTASVFNNTATFGNNLGGFGTTTSGASSLFGTTSTSTFSSVQNSAPTFGTPQTNSIFAP
SQNLFDPNNVFGGTGQLGNAPTTSLFNNPMTSQANTSLFGGPTTTTSNLFGSSSTGLQTN
PVFGVSTTSSGSFNSGMFTQPKTQMHAFGGAPVFAGVTNYANNSTGSSIFSSGQTFGAPT
SSIFAGSTVTATPAFGAAVAMTTPAFGTPIVAATIPGFGASIATTAPAFDLSQQPSNNTF
GTTVSAANVFGAQNTDTMSANNTPFGAPSATISGPFVTTSSQQFDSTNTSSAPFAGTGFG
VAVASTNNTFGTTETSSNSIFANAGTTFATSNGTVPNPSPFSASTFGGINTSSPFGSPAN
TTVTTTTLANPFTPRPQQGVSPFGNMAQNQSNINASPFGKLPFNTTTTNIIDDTVYSADG
ALTDDEKNMFLAERFIIGKIPLKPPTKDIR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggttatctgtaaatattatcgacaaggcaattgccgttatggtcaatattgccaattc
gaacatataaatcattttgcaggcaatactaaaaccgaggacgatattgtaattctggtg
gctaaggaagtactttttgccgagagaggtggccagtggttgctatcatgtttcgctcca
cttaaagaacgtccctgtatcccaggtatggaggatttatctccagaggaagttcggtgg
gagacatataatgcacaaaaaaatggcatgggtgaacaggcgaaactacactttcaacaa
ttatgtcaagaaatgaaggcaaaaagggaagtgctgaaaaatcccacgcgagaaacaatg
acaatgctgaaaaaaattttaggaagtggccaaaaagtttctcagctgggtctagttaat
aacacatcagctaataatgtgttcggaaatacaacgtacaatgtgcaaaataataatcca
tttggcggaggtggatttacctcctcgaacaatacatcgtcgatattcggaaagtccaat
aataatacagcatctgtatttaacaatacggcgacctttggaaataatctcggcggtttt
ggtactacaacaagcggtgctagctcgctttttggaacaacgagcacgtcgacattcagc
agcgtacagaacagcgcaccaacatttgggacgccacaaacgaattcgattttcgcaccg
tctcaaaatttattcgacccaaacaacgtatttggagggacgggccagcttggcaacgca
cccaccacctcattgttcaacaatccgatgacttcacaggcaaacacttcgctgtttggc
ggaccgacaaccaccacctccaatttgttcggcagctcgtccaccggattacaaacaaac
ccggtcttcggcgtctcgactacatcatccggctccttcaatagcgggatgttcactcag
ccaaaaacgcagatgcatgcattcggcggagcacctgtttttgcgggagtaaccaattat
gccaacaattctactggcagttcgatatttagcagtggtcaaacgtttggcgctcccaca
agcagcatcttcgccggatccacagtcactgcgaccccagcttttggtgcggccgtcgct
atgaccacgccagcttttggtacgcctattgttgccgctacgataccaggttttggtgca
tccatcgctactacggcgccagcctttgatctgagccaacagcctagcaataataccttt
ggaacgactgtatccgctgcaaatgtttttggtgcacagaacaccgataccatgtctgca
aacaatactccgttcggcgcgccgtctgctacgatcagcggcccgttcgtcaccactagt
tcgcagcaatttgattctacaaacacgagttcagcgccgtttgcaggcacaggatttggt
gtggccgtcgcgagtacaaataacacattcggcaccacagaaacctcttctaattcgata
tttgcgaacgcgggaactaccttcgcaacctccaatggaaccgtcccaaacccatcaccg
ttctccgcatcgacattcggcggtatcaatacttcttctccgtttggttcacccgctaat
acaactgttacaacaacgacactcgcaaatccatttactccacggccacaacaaggcgtt
tcaccgttcggaaacatggcacaaaatcaatctaacatcaatgcttctccttttggaaaa
ttaccgtttaacactactacaaccaatatcatcgacgataccgtttatagcgcggatggt
gcattaacagatgatgagaagaacatgtttttggctgaaagatttattatcggcaaaata
ccactcaaacctcctactaaagatataagatga
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