KEGG   Cyphomyrmex costatus: 108779878
Entry
108779878         CDS       T11118                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ccoa  Cyphomyrmex costatus
Pathway
ccoa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccoa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108779878
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccoa03041]
    108779878
Spliceosome [BR:ccoa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    108779878
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta EIF3I Beta-prop_EML_2 WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd PRP4 Beta-prop_WDR75_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_Nup120_160 WD40_like WD40_RFWD3 Nbas_N
Other DBs
NCBI-GeneID: 108779878
NCBI-ProteinID: XP_018402904
UniProt: A0A195C712
LinkDB
Position
Unknown
AA seq 524 aa
MSDDEDLVYVKKQKTVHYGSLEEAERARLAAVVETADEEKDVTNANDVSSNVSASAGNVH
ISNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLGEPICLFGEGPA
DRRTRLRELLASVGEDAIKKKHEEEEKPSHPIEKDTESTWYHEGPDSLQIARSWIAAYSL
PRAKARLDKARQDLLLPAATRTAKRQELLKKLQALSIYCSQIGDRRPISFCQFSPNSKIL
ATASWSGLCKLWSVPDCTLLRTLHGHNCNVGCIVFHPKATITEDVVGDNAETTCVLASCA
ADGTVKLWGGGTGEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCYDASWRLWDLEQQAEV
LHQEGHARAVYCISFQCDGSVCATGGHDSFGRVWDLRTGRCIMFMEGHLTSLFGIDFSPN
GFHIATASEDNTCKIWDLRKRTCIYTIPAHTNLLSDVKYQKIEGQYLVTASYDNTAKIWS
NKTWQPLKMLPGHDGKVMSVDVSPDHKFIATSSYDRTFKLWAPE
NT seq 1575 nt   +upstreamnt  +downstreamnt
atgtccgacgacgaggatttggtctacgttaaaaagcagaaaactgtccattatggttca
ttggaggaggcagaacgggcacgacttgcagctgtcgtcgaaactgcggatgaagaaaaa
gatgtcacaaatgcaaatgatgtcagcagcaatgtttctgcttcagcaggaaatgtacat
atttcgaatgagtacatggagctcgaggacgaaatgtccaaagatcggcaggcattattg
gaagaatttgaacgtagaaaaaaggctagacaaattaatgtttctacagatgattccgaa
gtaaagaaacacttaagacaattgggtgaacccatttgtctctttggagaaggcccagca
gatagaaggacaagattaagagaattattagctagcgtgggagaggatgctattaaaaag
aaacacgaagaagaagaaaaaccatctcatccaatcgaaaaggatacagaatcaacttgg
tatcacgagggaccagattctttgcaaattgcacgatcgtggatagcagcttattcgttg
cccagagcaaaggcacgactggataaggcaaggcaagatttattattaccagctgcaact
cgcacagccaaaagacaagaacttttgaaaaagttgcaagcattgagcatttattgctct
caaatcggtgataggaggcctatttccttttgtcagtttagccctaattcaaaaatcctt
gctacagcttcatggtcaggcttatgcaagttatggtctgtacctgactgtactttgtta
cgtactttacatggacacaattgtaatgttggctgtattgtttttcacccaaaagctaca
ataaccgaagatgtggtcggtgataatgcagaaacaacttgcgtgctggcatcgtgtgca
gcagacggtactgtgaaactgtggggtggtggcactggcgaagaaccattagcagaggtg
gaaggacatgaacctcacagagtttccaggatagctttccatccatccggacgatttctt
ggtacatgttgttacgacgcatcttggcgattatgggatttggaacaacaagcggaagta
cttcaccaagaaggtcatgctagagcagtatactgtattagttttcaatgtgatggaagc
gtttgcgccacaggcggtcatgactcttttggcagagtatgggatttgcgtaccggcaga
tgtataatgtttatggagggtcatctaacatccctctttggcatcgatttctcaccaaat
ggttttcatatagcgacagcgagcgaggataatacctgcaagatatgggatttgcgaaag
cgaacttgtatatacacgataccagcacataccaatttgctgtccgacgtgaagtaccaa
aaaatagaaggacaatatttggttactgcatcttatgataacacagccaaaatttggtcc
aacaaaacatggcagcctcttaagatgttaccaggtcacgatggaaaagtcatgtccgtt
gatgtatcgcccgatcataagtttattgcaaccagttcgtacgatagaacttttaaatta
tgggccccagaataa

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