Cyphomyrmex costatus: 108780371
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Entry
108780371 CDS
T11118
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108780371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoa03400
]
108780371
DNA repair and recombination proteins [BR:
ccoa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108780371
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ARM_CUL7_CUL9
Motif
Other DBs
NCBI-GeneID:
108780371
NCBI-ProteinID:
XP_018403551
LinkDB
All DBs
Position
Unknown
AA seq
1123 aa
AA seq
DB search
MPKVNTILNYFTSPKTVKKSETIKEEKEKSQTPKRGQKNKGFVRNGKENQNTDDKKRSYT
KDKDDDKEDDPVKPKRRRLIIPDDNSEDSGDEFKPEDLSEESESVSEGDTEQDSLTETEE
ETPEKKRKISNVKLKSKQISSNNTKNKKDSKHQSSQPVQSQSVSNRVTAHTWPHLKLDFL
QPEKIRDIHKRTLKDPDYDSKTLYVPNDFLINQTPAMRQWWELKSKHFDCVFFFKIGKFY
ELYHMDAVIGVNELSLTYMRGEFAHSGFPEIGYGRYSASLIERGYKIARIEQTENPEMMA
VRCSKMTKPTKFDKVVKREICQVSTRGTRVYTPLDVEASTPNSNYLLSLVEKCDLSSMIS
SFGVCFIDTTIGEFYLGQFVDDRCNSRLLTLLAHHPPVHVLYERGNLSQKTLQLINNTLP
AALKEPLQREAQFWSATTVLKKLHEENYFKKESDSSFAWPEGLKPYLNEGDSLGLTPADN
KELALHALGGCVSLLKEFLLEQQLLAQGYFNTYIPPDFSTANSRTGLNNANTMVIDAVTI
KNLRLFGEGSLINVLDRCCTAFGKRLLREWVCRPSCRKTVIMERQEAVKELMDRMDVMQS
ARAILSTLPDLERLLSKIHAQGNVARIKNHPDGRAIMFEGPTYSKRVIVDFTMTLAKFEE
VLKFIELFDDFKSRLITRHTQYEPNGEFPHLRETLDYFKTAFDHEGAKKQGYIVPKKGVD
AEYDSVLTELADIKEDLDKYLEKQKQHFGVKVTFHGTDRKRYQIEIPESQVKKVGSGYEL
QSQRKGFKRYYTAEAKELLTRQMSAEEHKDKVLKDLNRRIFAQFSEKYDMWHTAVYKLAT
MDVLISLADYAWNGDMCVPEIHDGIDSEIFIKIKDGQHPCIMSDNFIPNDTLLATDGAAS
FMILTGPNMGGKSTLMRQVGLITIMAQIGSYVPASSCCITLVDRIFTRLGANDDILAGQS
TFLVELSETAAILQHATPYSLILLDELGRGTSTYDGTAIAAAVVDALTKLKCRTLFSTHY
HSLVEDYKTNEEVTLAHMACMVETEEEEEVSQETVTFLYKLSEGACPKSYGFNAARLAGV
PSIITKRAHEIASQMEQETNHKHIFNALCKANGAGMRSLIAAI
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagtaaatactatacttaattatttcacatctccgaaaactgttaagaagtcg
gaaacgattaaagaagaaaaagagaaatctcagactcctaagaggggccaaaagaacaaa
ggatttgttaggaatggaaaagaaaatcagaatactgatgacaagaaaagatcatataca
aaggataaagatgatgataaagaagatgatcctgtaaaacctaaaagacggcgtcttatt
attcctgatgataactctgaagattctggagatgaattcaaaccagaagatctttctgaa
gaatctgaatcagtttctgaaggagatacagaacaagattctttaacagaaacggaagag
gaaacaccagagaaaaaaaggaagatatccaatgttaaattgaagtcaaagcaaataagt
tctaataatacaaagaacaaaaaagattcgaaacaccagtcttcgcaaccagttcaaagt
caaagtgtaagcaatagagttactgcgcacacttggcctcacttgaaattagatttcttg
caaccagagaaaataagggatatacataaaagaacgctgaaggatccagattatgattct
aagacgctctacgtacctaatgattttttaataaatcaaactcctgcaatgagacagtgg
tgggaattaaagagtaagcacttcgactgtgtatttttctttaaaatcggtaaattctat
gagttgtatcatatggatgcagttattggtgtcaatgagctcagtctcacatatatgcga
ggtgaattcgcgcattctggatttcccgaaattggatacggtcgttattcagcgagttta
atagagagaggatacaaaatcgcacgaattgagcaaacggagaatccggaaatgatggca
gtgcgttgcagcaaaatgactaaaccgacaaagtttgacaaagtggtgaaacgcgaaatt
tgtcaagtcagtaccagaggcacaagagtatatacaccactagacgtggaagcatctaca
ccaaactccaattatctattatccctagtcgaaaagtgcgatctcagttcgatgatcagc
tcctttggagtatgctttatagatacaacaataggtgaattttatcttggccaattcgtc
gatgaccgctgcaactcgaggctattgactctattggctcaccatccaccagttcatgtg
ttatatgaacgcggtaatttatcgcaaaagactctgcagcttataaataacactctaccg
gctgcgctaaaagagccgctacagcgcgaagcacaattctggtctgctaccactgtgctg
aaaaaacttcacgaagaaaattatttcaaaaaagagagcgactcgagctttgcatggcct
gaaggtctgaaaccatatttaaacgaaggagacagcttgggtttaacgccggcagataac
aaagaattagcgctgcacgcacttggaggatgcgtgtctttgttaaaagagttcctactc
gaacagcaattattagcgcaaggctacttcaatacgtacattccgccggatttttcaact
gcaaatagtcgtacaggtcttaataatgctaacactatggtaatagatgctgttacgata
aaaaatctaaggctcttcggagaaggctcactcattaatgtattagatcgttgctgtact
gcattcggcaaaagattgctgcgtgaatgggtttgtagaccatcttgccgcaaaaccgtt
attatggagcgccaggaagctgtgaaagagttgatggatcgaatggacgtaatgcagtca
gctcgcgcaattttatcaactctgccggatctcgaaagacttttgagcaagatacacgct
cagggaaatgttgctagaataaaaaatcatccagatggtagagccataatgtttgaaggc
ccaacatattcgaagagggtgattgtagatttcactatgacactcgccaaatttgaagaa
gtgctaaaatttatcgaactgtttgatgatttcaaaagtaggttgataactcgccacact
cagtatgaaccgaacggtgaattccctcatttgagggagacattggactactttaagact
gcattcgatcatgaaggagctaagaagcaaggctacatcgttccaaagaaaggagttgac
gctgaatacgattcagttttgaccgagctcgcagacatcaaagaagatctagacaaatac
ttggaaaaacaaaagcagcatttcggcgtaaaagtaacattccatggaacagataggaaa
cgttatcaaatcgagattcctgagtcgcaggttaagaaagtcggttctggatacgaatta
cagtcacaaaggaaaggcttcaaacgttattatactgccgaggcaaaggaacttttgaca
agacaaatgtctgccgaagagcataaggacaaggtgctgaaagatctcaacaggcgaata
ttcgcgcagtttagtgagaaatatgatatgtggcatacagctgtttacaaattggccacc
atggatgtgctcatctcccttgcggattatgcatggaacggtgatatgtgtgtcccggaa
atccacgatggaatcgatagcgagatattcatcaagataaaagatggacaacatccctgc
atcatgtctgacaattttataccgaatgacactttattggcaaccgacggcgccgcttct
ttcatgattttgacgggaccgaacatgggaggcaaatcgaccctcatgcgccaagtcggc
ctgatcacgatcatggcgcagataggcagctacgttccagccagctcgtgctgcataaca
ctggtggaccgtattttcacgcggctgggagcaaacgacgatattttggctggccagagt
acgtttttggtcgagctaagtgaaaccgctgcaatactgcaacatgctacgccctattcg
ctgatacttcttgatgagctgggacgtggtacatcaacctatgacggtacagcaatagcg
gctgcagtcgttgatgcgttgaccaaactcaaatgtcgcacgttattctcgacgcattac
cattctctggttgaagattataaaactaatgaagaagtcacgttagcccacatggcatgt
atggtggaaaccgaagaggaagaggaagtatcgcaagagaccgtgacgttcttgtacaag
ctcagcgaaggggcatgtccaaagtcctacggattcaatgccgctcgactggcaggcgta
ccgtctataatcacaaagagagcgcacgagatagctagccagatggagcaggaaactaat
cacaagcacattttcaacgctctttgcaaagccaatggtgctggaatgagaagtctcatt
gctgccatttaa
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