Cyphomyrmex costatus: 108780375
Help
Entry
108780375 CDS
T11118
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03030
DNA replication
ccoa03410
Base excision repair
ccoa03420
Nucleotide excision repair
ccoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108780375
03410 Base excision repair
108780375
03420 Nucleotide excision repair
108780375
03430 Mismatch repair
108780375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccoa03032
]
108780375
03400 DNA repair and recombination proteins [BR:
ccoa03400
]
108780375
DNA replication proteins [BR:
ccoa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108780375
DNA repair and recombination proteins [BR:
ccoa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108780375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_30
AAA_22
BRCT_2
AAA_14
RuvB_N
AAA_5
AAA_16
AAA_6
AAA_33
NTPase_1
AAA_17
PTCB-BRCT
AAA_19
RNA_helicase
AAA_assoc_2
DUF1824
Viral_helicase1
AAA_7
nSTAND3
AAA_18
TsaE
Motif
Other DBs
NCBI-GeneID:
108780375
NCBI-ProteinID:
XP_018403557
LinkDB
All DBs
Position
Unknown
AA seq
1006 aa
AA seq
DB search
MPKDIRSYFAPVAKKNSEPAAQKPRKRRVISVFSSDEDEEKPRSSIKRSNVVKTLKSSIL
SDSEDEVVILKDNKKESSPSIASKKNKGKDSSKAVPFNELFSKKPITRVEEAKVIQKLQK
VESQFHDDEDFDAVLKQLDVVQDTSIQDKQKDKNSIKKVDSPKKSKAIVKTEVDSNKNRK
HNNSLKDCNSKTNNTNELKSEVKKSPYKNNVYSKVTNSSPKQNLQQEEKGSLNGNLEKDN
DIEKLSSRKKVKKMEENLFEDRKEMKKQRALMYEKYLQRGGARNPGSKEIPIGAENCLVG
ISFVITGVLDSLERNEVEDLVRKYGGRIVNSISSKVNYIIVGDEAGPSKLTKANNLSIKQ
ISEDNLLEMIRTKPEGKAAHIKPTKARSNVKKTFSKESDKLLSPNKTKALDSLENIKTPP
SSPVKIIVNTKTSPVSKQTSDASNNTQKIITSIGSEPLVEKYRPKTMKQIIGQQGDRSCA
HNLYIWLRDWHQNRQKFKDSNSKQIHGQSFKAALLSGPPGVGKTTTVQVVCKELGYDLVE
FNASDTRNKTLLKEAVSGLLSNTTMKDYITGTKQKITSKHVLLMDEVDGMAGNEDRGGLQ
ELVNLIKHTDVPIICICNDRFNTKVKTISTHSYDLKYPKLRVEQIRSSMKSLCFKENIKI
STEDLDRLIESTNYDIRQVINHLEFLGTQMSHVKTTDKKHSNKNFKLGPFDVIKIAFNAE
EQKNMSLNDKISLYFHDYNIAPLFIQENYQGVRSQVSPRQRLERIANAADSISQGDLIEK
VMRSNMMWSLLPLHACFSFVIPANEMSGSSDGLIRFPSWFGRNSKATRFNRLLQELTSHT
RLSTGANKDALNMDYLPHIRNAIIKPLIDNGVDGIEAAINIMGQYHLTREDLDSAIEISL
WPGMCDSTSNLNSKVKAAFTRAYQKNPPMLPYAINSTAVAKKRSRQDNDVIDEVEDDEEE
EIDDIDFDKMIKAKKATVASTSKAASSTRKRGEPAKKRGRVRGKEK
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagatatcagatcctacttcgctccggtggcgaagaagaacagcgagcctgct
gctcaaaagcctcggaaacggcgggtcatttcggtattttcgtcagacgaggacgaagag
aaaccacggtcgtccataaaacgctctaacgttgtaaaaacattgaaatcttctattttg
tctgactctgaggacgaggtagtcatccttaaagataataaaaaagaatctagtccttct
atagcaagtaagaaaaacaaaggcaaggattcatctaaagcagtaccttttaatgaatta
tttagcaagaagcctataaccagagtagaagaggcaaaagtgattcaaaaattacagaaa
gtggaatctcagtttcatgacgatgaagattttgatgctgtgcttaaacaattagatgta
gttcaagatacttcgatacaggataaacagaaggataaaaacagcattaaaaaagtagat
agtcctaagaaatcaaaagctatagttaaaacagaagtggactctaataagaacagaaaa
cataataatagtttgaaagattgcaatagtaaaactaataatacgaatgaactaaaatct
gaggtaaaaaaatctccctataaaaataatgtatattcaaaagttacaaattcttctcca
aaacagaatttacaacaagaggaaaaaggtagcttgaatggaaacttagaaaaagacaat
gatatagaaaagttatcaagtagaaagaaagtcaaaaaaatggaagagaatttatttgaa
gataggaaagaaatgaagaaacagcgtgctttaatgtatgaaaaatatcttcagagaggc
ggcgctagaaatcctggttcaaaagagatccctataggtgctgaaaattgtttagtcgga
ataagtttcgtaattactggtgtattggattccttagaaagaaatgaagttgaggattta
gtacgaaaatatggtggccggatcgtaaattctatatcaagcaaagtaaattatattatt
gtgggagatgaggctggtccaagcaaattgacaaaagctaataatttaagtatcaaacag
atatctgaagataatctccttgaaatgattcgcacgaaaccggaaggtaaagctgcgcac
attaagccgacaaaagcaagatcaaatgtgaaaaagacatttagtaaagagagcgataaa
ttactgtcaccgaacaaaacaaaagcattagattcacttgaaaatattaaaacaccacca
tcttcaccagtgaaaatcattgtgaatacgaaaacgtcaccagtatcaaaacagacttca
gatgcaagcaataatacacagaaaataataacgagtattggatcagaaccattagttgag
aaatatagaccaaaaactatgaagcagattataggtcagcaaggagataggagctgtgca
cataacttatacatatggctacgtgattggcatcaaaatcgtcaaaaattcaaagacagc
aatagcaagcaaattcacggacaaagctttaaagctgctttgctgtcaggcccaccgggt
gttggtaaaacaacaactgtgcaagtcgtttgtaaagaattaggatatgatcttgtagaa
ttcaatgcttccgacacgagaaacaaaacacttctgaaagaagcagtctcagggttatta
tccaacaccacgatgaaagattatatcacaggtacgaaacaaaaaattacgagcaagcat
gtgctgttgatggatgaagtcgatggtatggctggtaacgaagatcgtggtggtttacag
gaattagttaatttaataaaacacacggatgtgccaattatctgcatatgtaatgaccga
tttaatacgaaagtgaaaactatttctacacacagctacgacctgaaatatccgaagctc
agagtggaacagatcaggagttctatgaagtctctgtgctttaaagagaacattaaaatc
tcaacggaggatctcgatcgtttaatcgaatcgacgaattatgatattcgacaagtaata
aatcatctggagtttctcggcacccaaatgtctcacgtaaagacaactgataaaaaacat
tcgaataagaactttaaactcggtccattcgatgttataaaaatagcatttaatgcagaa
gagcaaaaaaatatgagtttgaatgataagatcagtttatatttccacgattacaatata
gcgcctctttttatacaagaaaattatcagggagttagatctcaagtgtcacctcgtcag
aggctggaaagaattgccaacgcagctgatagtatatctcagggggacctcatcgagaag
gtaatgagaagtaacatgatgtggagtctacttccattacatgcttgtttctcattcgtt
ataccagctaatgaaatgtcaggaagctctgacgggttgatacgattcccgagttggttt
ggacgaaattcgaaggcaacgaggtttaatcgattattgcaagagttgacgtcgcataca
cgattatctacgggtgcaaacaaggatgccctgaatatggattatttgcctcatattcga
aacgctattataaaacctttgatagataatggtgtagatggtatagaagcagcgataaat
attatgggacaatatcatttaactagagaagacttggattcagcaatagaaatttctctt
tggccaggaatgtgcgattctaccagtaatcttaatagcaaagtaaaagcagcgtttaca
cgcgcatatcaaaagaatcctcctatgctgccgtacgcaattaatagtactgcagtagca
aagaaaagatctagacaggataatgatgtcatagatgaagtagaagatgatgaggaggaa
gaaattgacgatattgattttgataagatgatcaaggcgaaaaaagctactgttgctagt
actagcaaagctgcttcatcgacgagaaaacgtggcgaaccagctaagaaacgaggaaga
gtacgcggtaaagaaaaataa
DBGET
integrated database retrieval system
