Cyphomyrmex costatus: 108780399
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Entry
108780399 CDS
T11118
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa04140
Autophagy - animal
ccoa04142
Lysosome biogenesis
ccoa04145
Phagocytosis
ccoa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
108780399
04142 Lysosome biogenesis
108780399
04140 Autophagy - animal
108780399
04148 Efferocytosis
108780399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccoa04131
]
108780399
Membrane trafficking [BR:
ccoa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108780399
Hops complex
108780399
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_5
zf-RING_11
zf_RING_Vps8
zf-C3H2C3
zf-RING_2
zf-C3HC4
zf_RING_Vps8_fungal
zf-RING_Vps41
zf-RING_UBOX
COMP
zf-rbx1
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
108780399
NCBI-ProteinID:
XP_018403593
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MTSMFDQYEQASQRSKQVLAPPIRPDISTAGFIQMKLQDDGPIFTKQKVNFLPSDKILHL
VVSSNTIVIAMANNILLRIDMKQPDKTEEIDISKYALSMKMSGLFLDPLGHHLLITLVPR
HGENPLPELFYLHRKTTKLKQAGKFKGHEITAVGWNFSNALETSSGSILLGTSKGLIFET
EIGLETDKIFNTSLEQYWRQVFDIGKNSKPPITGIEFHRIPNSDKYVIIVTTLMRIYQYI
GAIGNPEEKPLLQQVFYRYLNAQETFNEVINTLPYSKMQFYYPSLDVLPKSFGWLTEAGI
LYAQVDAKLDTNNVLINQRMLTCPETSLMGSNGPQTTLIPLSFVLTEFHALLLYSDHVKG
ISLLNQELIFEDVYNDAVGKLIGITKDPATRSIWAYSERAVFKYKVTKEDRNVWQVYIDK
GEFELAKQYCKDNPAHIDQVLVKQAEMLFKNKEYEKSALIYADTHSSFEEISLKFLQEWQ
IEALKTFLRKKLDGLKMQDKTQITMIVIWVIELFMNQMGALRSNNTSYLHDLQYTELQKE
FDSFLTIPKVEECIRKNRSTIYDLMASHGDKDNLIRLTIMHCNYEEVIRQHLYKNDYLEA
LGVLKSQNNKDLFYQFAGILLQELPRPTVAVLISQGSSLKPAKLLPALVSCNSDEKHAKE
IIKYLEFCVYKQGSQEQAIHNFLLSLYARYKQDEVMRYISSQGQDISMVHYDVHYALRLC
QEVGLTEACVQLSALLGLWIIAVDLALTISVDLAKQIAAMPSDHDDELKKKLWLKIAEHV
VREKDDIQQAMEFLQHCDLVRIEDILPFFSDFVTIDHFKEAICNSLQEYNQHIQDLKEEM
QEATKAAELIRKDIQAFRTRCTFVHARDTCNTCEVQLLLRPFYVFPCGHKFHSDCLVAAL
TPMLSMDQRTKLADLQRQFTAISNRPEDTTSTTSVSLSTRDKIKTDIDELVASECLYCGE
LMIESIDKPFIEEEDYERVMKEWT
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaatgtttgatcagtatgagcaagcttctcagcgatccaaacaagttctggca
ccaccaattcgtccggatattagtacagctggttttattcaaatgaagctacaagatgat
ggaccaatattcactaagcagaaagtcaactttctaccatcagacaaaattcttcattta
gttgttagcagtaacacgattgttatagctatggctaacaatattttgttgcgcattgac
atgaaacaacctgataaaactgaagaaatcgacatatctaaatatgcattgagcatgaaa
atgtccggcttgtttctggatccgttgggtcatcatttgctaataactctggtaccaagg
catggagaaaatccactcccagaattattctacttgcatagaaagacaacaaagctcaag
caagctgggaagttcaaaggccacgaaatcactgctgtgggttggaatttttctaacgct
ttggaaacaagctctggttccattttactgggtacttcaaagggcctgatttttgaaaca
gagattggcttggagaccgacaagatttttaatacaagtttagagcagtactggcgtcag
gtatttgatataggaaaaaatagcaagcctccaatcactggaatagaatttcatagaatt
cctaattcagataaatacgtgatcatcgtaactactcttatgcgcatttatcagtatatt
ggtgctattggcaatcctgaagagaagcctcttctgcaacaagtgttctatagatatttg
aatgcacaagagaccttcaacgaagtaataaatactttaccatattcgaagatgcaattt
tattatccatctctcgacgtcctgccaaaatcttttggatggctaacagaagctggtatc
ctgtatgctcaggtggacgcgaaactggacacaaataatgtactgatcaaccaacggatg
ttgacttgcccggaaacgagtctcatgggcagtaacggtccgcaaaccactttaataccg
ttgtcttttgtgctgacggaatttcatgcactattgttatattcagatcatgtgaagggc
atatcactgttaaatcaggaattgatattcgaagatgtttataatgacgcagtcggtaaa
ttaatcggcattaccaaagatccggcgactaggtcgatttgggcttacagtgagcgagct
gttttcaagtataaagtaacgaaggaagataggaatgtctggcaggtatatatcgataaa
ggcgagtttgagctggctaagcagtattgtaaagataatccggcgcatatcgatcaagtg
ctcgtgaaacaagcagaaatgctctttaagaataaagaatatgaaaagagcgctttaata
tacgctgacacacattcgtctttcgaggaaatttcgttaaaatttttgcaagaatggcaa
atcgaagcactgaaaacattcttgcgtaagaaactcgacggcttgaagatgcaagacaag
acgcagataacgatgattgttatttgggtgatagagctgtttatgaatcaaatgggagct
ctgcgcagtaacaatacatcttatcttcacgatttgcagtatacggaattacagaaggag
tttgacagcttcctcaccattccaaaagttgaggaatgtatcaggaaaaatcgtagcaca
atatatgatttgatggccagtcatggtgacaaagataatctgatacgtctaacaataatg
cactgcaattatgaggaagtgattcgtcaacatctgtataaaaatgactatctagaggcg
ctaggggtacttaaaagtcaaaataataaggatctcttctatcaattcgccggcatactg
ttacaagagttgccgcggcccacggtggctgttttaatttcgcaaggatcctcactgaag
ccagcaaagcttttgccagctttagtctcatgcaacagtgacgagaaacacgcgaaagaa
attattaaatatttagagttttgcgtatacaaacagggctcacaggagcaagcaattcac
aactttcttttgtctctatacgcccgttacaagcaggacgaagtaatgcgatacataagc
tctcaaggtcaagatatcagcatggtgcattacgacgtgcattacgcgttgcgattgtgc
caagaggtaggcttgacagaagcctgcgtgcaattgtcagctttactcggtctgtggatc
atcgctgtagatcttgcgcttacaatcagtgtagatctcgccaagcagattgctgctatg
ccatctgatcatgatgacgagctgaagaaaaaactatggttgaagatagcggagcacgta
gtacgagaaaaagacgacatacagcaagcaatggaatttttacaacactgcgatttagtt
aggatagaagatattttaccctttttctccgatttcgtcacgattgatcatttcaaagaa
gctatttgcaattccctgcaggaatacaaccagcatattcaagatcttaaggaggagatg
caggaagccacgaaagcagcagaactaatacgaaaggacattcaagctttcagaactaga
tgcacctttgtgcatgctcgggatacgtgtaatacatgtgaggtgcaactgttgctaaga
cctttctatgtatttccctgcggtcataaatttcatagtgattgtttagtggcagcatta
acgccgatgctatccatggatcagaggacgaaattggcagatcttcagcgacagtttaca
gctatttcaaatcggcctgaagatactacttcgacgacctctgtgtcattgtccacgagg
gacaaaattaaaactgatatcgacgagctggttgcttcagagtgtctctactgtggggaa
cttatgatagaatcaatagacaaaccattcattgaggaagaagattatgaacgtgtgatg
aaggaatggacgtaa
DBGET
integrated database retrieval system
