Cyphomyrmex costatus: 108780457 Help Entry 108780457         CDS       T11118                                  Name (RefSeq) collagen alpha-1(XI) chain-like   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism ccoa  Cyphomyrmex costatus Pathway ccoa04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ccoa00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     108780457  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ccoa00536]     108780457 Glycosaminoglycan binding proteins [BR:ccoa00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    108780457 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  108780457 NCBI-ProteinID:  XP_018403674 LinkDB All DBs Position Unknown AA seq 1703 aa AA seqDB search MRLLDHTREQWKSLRSTWIMLLVHLLFFLTLTLSDLQRNTVVDATLQDALQNVTDIIEAT GMQEQLFGVKRTESRCKDDTIAYDIMEAAILMVPTNILFPAGIPQDFSILIVAKPRTNES TSKDYSTSVLFTVYGDSGEEQLILSMGRDIKFFYSTNPDDRNEPISFGVDISDGQWHRLG ISIKGDTVTIILDCNRHITKKLRRNLKKTISGILMIGQQLKGDLYLGSLEMLTIASNPDA AYEICTKFAPDCKQSKYRLNYNSSFNEDDYVEENESDLDEDDNQDFLLHSTITNTINVLT SATDNPASYEVEMTTLANVYNSESNHQQNYGKSANNPYNEEYLKRYNTRSSPGPRGFPGP PGVPGSPGEKGEPGRDGLSGLPGVSGPPGNVFVIPSLNQQDNEKGPDSQVEILRQIISQH MLAMRGIEGPMGLTGVQGTDGPPGQQGQKGEPGEIGEPGPRGNQGSPGNPGREGRIGRPG RDGERGLSGPPGMKGEQGQMGLPGLPGDKGERGSSGKSGEPGLPGHEGMQGEDGPPGLPG LPGELGPRGFIGPRGFPGLPGNPGIPGNEGPPGIKGNTGPLGPPGAPGQPGPTGSIGPPG PQGPLGPIGLVGPQGKTGISGLSGADGSPGLPGNPGIPGTKGEQGPSGLQGPVGFPGVRG VKGDEGQRGLTGERGEKGDKGLEGEKGDAGAKGEPGATGPQGISGLEGLEGPKGFEGPRG ETGPAGSPGEKGKIGLPGYAGYPGNPGERGDKGQPGIQGSSGDKGERGNSGLQGERGATG PRGFRGTRGRRGAEGFPGPKGDTGQPGPAGPSGEIGSPGVEGPRGFAGLSGSPGLDGKDG IPGPPGERGLTGESGSPGPPGIPGVIGFPGPPGEPGQPGEPGTSGSPGAPGEIGLPGEQG KEGPPGPHGLTGLKGSPGPDGLPGFPGERGLSGLPGLHGSKGEMGSVGAQGPPGDKGIQG DPGKDGSPGPEGKQGHKGDKGFTGLKGEKGDPGPAGPVGRDGLPGQRGLPGPPGPIGSPG EDGDKGNVGSPGEKGFKGFQGDIGLPGPQGVQGRRGESGLVGPPGEKGPPGEIGQRGPKG EIGPIGTIGPAGSVGPSGLPGQPGVKGEVGDPGTIGPIGPPGIPGERGPRGSKGLKGAEG PPGPEGRQGEKGDSGMPGSSGKPGLEGKQGEKGLPGMKGEEGKLGLLGLPGLRGLTGPEG PKGDTGLPGLPGSSGEPGLMGIKGEPGKDGEDGRVGDPGVPGEAGQPGKEGLPGPPGKSG PEGPAGQQGNTGLPGEKGDIGLLGAPGFEGPIGPQGPPGLLGLPGERGLLGTAGENGLVG MPGAIGPSGIIGPIGPKGQKGDKGRRGIKGHRGESGIVGIKGDHGNEGEKGDRGFPGTQG FKGNPGRPGHVGFRGEQGFVGLPGPSGPPGPKGNVGNDGLRGDIGPAGPPGPPGPPGLSI EQSTFDGIIPPMTYRDQSAKRKRDAPEDIDGEEIFDRKLSDINKAFLNIRQELYLMRKPI GTRDNPVRTCRDLFYGHPDFKDGWYWIDPNLGMPDDAISVICNITNMGETCIFPDIHSSH MPSIPWRKEDNKTDWYSHLRGGFRISYETIGVIQMNFLRLLSQEAYQNFTYTCTNSIAWY DDDNRSYNLSLRLLGDNGDEFSYNSIRPHLIFDECKNRSDKKETLFLIRTNKLQQLPLID FYPVDYGSPQQAFGFKVGPVCFK NT seq 5112 nt NT seq  +upstreamnt  +downstreamnt atgcggctattggaccacacgagagaacaatggaaatcgctgcgatccacgtggatcatg cttcttgtacatttactgtttttcctgacgcttaccctatctgatttgcagcgaaacaca gtagtggatgctacgctgcaagatgcattgcagaatgtgactgatataattgaagccacg gggatgcaagagcaactttttggagtgaaaagaacggaaagtcgttgcaaagatgatacg atcgcgtacgatattatggaagctgcgattctgatggttcctactaatatattatttccg gccggcataccacaagatttctctatcttgattgttgcaaagccaagaactaacgagtca acgtccaaagattattccacatcagtactttttactgtttatggtgacagtggcgaagaa cagttaattctttcgatgggccgcgatattaaatttttctatagcacaaacccggacgat agaaatgaacctatttcttttggtgtcgatatttctgacgggcagtggcatcgattagga attagtattaagggcgataccgttacaattattctcgattgcaatagacatattacgaaa aagttacggagaaatctcaaaaaaacgattagtggcattcttatgattggacagcaactt aagggcgatttatatctgggaagccttgagatgctgacaattgcttcaaatccagacgct gcttacgaaatctgtacaaagtttgcgccggattgtaaacaatcaaaatatagactgaat tataattcatctttcaacgaagatgattatgtagaagaaaacgagagtgacttagatgaa gatgataatcaggattttttacttcatagcacaataacaaatacaattaatgttttgaca tcagcgacggataatcctgcatcttatgaagtggaaatgacgacgcttgcgaatgtgtat aattcggaatcaaatcatcaacagaattatggtaaatcggcaaataacccttacaatgaa gaatatttaaagcgttataatactcgaagttcacctggaccccgtgggtttcctggaccg ccaggagtacctggctctcctggcgagaaaggcgaacccggacgagatggattatctgga ttgccaggtgtatctggtccgccaggtaacgtcttcgtgataccctcgttgaatcaacag gataatgaaaagggaccagattctcaggtagaaatattgcggcagataatatcacaacat atgcttgcaatgagaggtatagaaggcccgatgggccttacaggtgtccagggtacagat ggaccgcctggtcagcagggtcagaaaggagaacctggtgaaatcggcgaacctggacct agagggaatcaaggtagtcctggaaatcctggcagagagggtaggataggtcgtcccggt agagacggcgaacgcggtcttagtggaccgccagggatgaaaggtgagcaagggcaaatg ggattaccaggtctaccaggcgataaaggcgaacggggatcctcaggtaaatcaggtgaa ccaggtttgccaggtcatgaaggaatgcagggtgaggacggtcctccaggtttaccaggt ctacctggtgaattgggtccgagaggatttattgggccaagaggttttcctggattacca ggtaatcccggtattccaggaaacgaaggaccaccaggtattaagggtaatactggtcca ctcggtccacctggtgcaccaggtcaaccaggacctacaggttcaataggaccacctgga cctcagggtccactagggccgatcggtttagttggtccacaagggaagacaggaatttcc ggtctttcgggtgctgatggatctcctgggcttccaggcaatcctggaatcccagggaca aagggcgagcaaggtccatcgggtttacagggacctgtgggatttccgggtgttcgaggt gtaaaaggtgacgaaggccaacgtggtctaacgggtgaacgcggtgaaaaaggtgataaa ggtttggagggcgaaaagggagacgctggagcgaaaggagagcccggtgcaacaggtccg caaggcatttctggccttgaaggtttggaaggaccgaaaggttttgaggggcctcgtggt gagactggacccgctggttcgccaggagaaaaggggaaaataggtctaccagggtacgct ggctatccaggaaatcctggagaaagaggagacaaaggacaaccaggaattcaaggatca agcggtgataaaggagaaagaggaaacagtggattacaaggagaacgtggcgcaacgggc ccacggggttttagaggaactcgtggaagaagaggtgcggaaggatttccgggaccaaaa ggtgacactggtcagccaggacctgctggaccgtcaggcgagatcgggtctcctggtgtt gaaggtccacgtggatttgcgggactatcgggttcaccaggtcttgatggaaaagatggt ataccaggtccacccggtgagcgcggtctaactggcgaatcaggatctccaggacctccg ggaattcccggtgttattggttttccaggaccacctggagaacctggtcaaccaggcgag cctggaacatctggtagtccaggggctccgggtgaaattggtttaccgggtgaacaaggg aaggaaggaccaccgggtccacacggcttgacaggactcaaaggatcaccgggtcctgac ggattaccaggatttccgggtgaaagaggtctgagtggtttaccgggactgcatggctcg aagggtgaaatgggatctgtcggagctcaaggaccgcccggtgacaagggtattcaagga gatcccggtaaagatggatcaccaggtccagaaggaaaacaagggcacaaaggagataaa ggtttcactggactcaaaggcgaaaaaggcgatcctggaccagctggacctgtaggtcgc gacggtttaccgggacaacgaggtttaccaggtccacccggaccaattggttctccgggt gaagatggtgataaaggaaatgtaggttcacctggtgaaaaaggattcaaaggatttcaa ggagacattggtcttccaggtccgcaaggagtacaaggacgacgtggtgaatctggtcta gtaggtcctccaggagaaaaaggaccaccaggtgagattggacagcgaggtccaaaaggc gagatcggtccgatcggaacaattggacctgctggatctgtaggaccgagtggtttacca ggtcaaccaggtgtaaaaggtgaagtcggagatcctggaacaattggtcctataggtcct ccgggaattccgggagagcgaggtcctagaggatccaaaggtcttaagggtgcagaaggt ccgccgggtccagaaggtcgtcaaggtgaaaaaggagacagtgggatgcctggatcttcc ggaaaaccaggactagaaggaaaacagggggaaaaaggtctaccaggaatgaaaggggaa gaaggtaaattaggacttcttggacttcctggactacgaggattgactggtcccgaggga ccaaaaggtgatactggattacctggtcttcctggatcgtctggagaacctggtctcatg ggtataaaaggcgagcctggaaaggatggcgaggatggacgagtaggtgatcctggtgta ccaggcgaagctggacaacctggcaaggaaggattacctggtcctcctgggaaatcgggt ccggaaggacctgcaggtcagcaaggtaatacaggtttgccaggagagaaaggagatatc ggtctccttggagcgccgggttttgaaggacctatcggacctcaaggtcctcctggtttg cttggtttaccaggcgaaagaggtttactaggcacagctggggagaatggtcttgtaggt atgccaggagctattggaccttctggaattattggaccgattggtccaaaaggccagaaa ggtgataaaggtcgtagaggaattaaaggacatcgaggcgaatcgggaattgttggaatc aaaggcgatcatggaaacgaaggagagaaaggcgatcgcggttttcctggaacacaagga ttcaaaggaaatcctggacgtcctggtcatgttggatttagaggggaacaaggatttgtt ggtctacccggaccatcgggaccgccagggccaaaaggtaatgtaggaaatgacggactg cgaggtgatataggtccggcaggtccgccaggcccaccaggaccccctggcttgtcaata gaacaatctacttttgacggaataataccaccgatgacatatcgtgatcaatcagctaaa agaaaacgtgatgctccagaggacatcgatggagaggaaatatttgacaggaagctttca gacataaacaaggcttttttaaatatacgacaggaattatatttaatgcgtaagccaatt ggtaccagagacaatccggtgaggacatgcagagatttgttttacggacatcctgatttt aaggatggttggtactggatcgatccaaatttgggcatgccagacgatgctattagtgtg atttgtaatatcacaaatatgggtgaaacttgcatttttccagatattcatagtagtcac atgccgagcataccctggagaaaagaagataataaaactgactggtattcacatttacgt ggaggatttagaataagttacgagacaatcggagttattcagatgaactttctgcgtcta cttagtcaagaagcttaccagaattttacgtatacgtgcacgaacagcattgcctggtac gatgacgacaatcgcagttacaatctctcgctgcgattactgggtgacaatggtgacgaa ttctcgtacaacagtatcaggcctcatctgatcttcgatgaatgcaaaaatcgaagtgat aaaaaggagactctgttcttaattcgcactaacaagttacagcaattgccgctgatcgat ttttatccagtcgattacggatcaccgcaacaggctttcggtttcaaagttggcccggtt tgttttaagtag

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