Cyphomyrmex costatus: 108780555
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Entry
108780555 CDS
T11118
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108780555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108780555
03012 Translation factors [BR:
ccoa03012
]
108780555
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108780555
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108780555
Translation factors [BR:
ccoa03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108780555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
ATPase
AAA_22
ResIII
nSTAND3
NPHP3_N
AAA_19
PhoH
AAA_14
NACHT
NB-ARC
ABC_tran
ATPase_2
RsgA_GTPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
108780555
NCBI-ProteinID:
XP_018403813
LinkDB
All DBs
Position
Unknown
AA seq
963 aa
AA seq
DB search
MSHQRGFKGMFNSYARYNRDEQTQSTSGYKRTYSQARRPPGLKGKEIGMYYKNKNKGRQK
TKASEVLKLSLNIQQPIRIMLDNAERFYNPFFCPNSKSDKDDKDYQFHDTQFKRKFFEIV
HGDIQQNLAKAMNVSSKLRRNSDIDRILQNDNREKHNQHAYNNMLKFRLKLPAYKKRSEI
LQLIEDNQVVVISGETGCGKTTQIAQFILDDELEAGNGSVTRIICTQPRRISAISVAERV
AMERAENLGNSVGYQIRLEKQPSRDHGSILFCTTGILLQIMKHDPALKGFSHVILDEIHE
RTTESDFVITLLKQIIPKRIDLKVLLMSATLNAESFSKYYNDCPMIHIPGFTYPVQEFYL
EDVLSVVNHKFPEAPPEPTGHKKHLKRYKEQRCKKEEFLDVLQPYIRQIMAEKKYERHVI
DQLRNVNSEDLSLELIEKLVRYICNTKGPGAILIFLPGMMDISKLNRMMLDSKCYPSHKY
VIYPLHSRMPTVDQKLIFKEPPHGVRKIIIATSIAETSITIEDVVYVIDCGKTKFGKFDV
NKNIQTLEPEWVSIANAKQRRGRAGRVKSGECYHMYTRAREMTFDQYPLPEMLRTRLEEV
ILQIKVLQLGRVKQFLATVMDPPDLKAIDLSVELLETLNALDENENLTPLGYHLAHLPLD
PRTGKMILWGALFSCVEPIFAIAASLTFKDAFYCPLGQEEKANKKKLELSMEQCSDHIAL
AEALRRYEVAFRRGNVRQFCREYFLSFNTLKLLSEMKAQFAQYLYDMKFLDSENPSHVNS
NRNSNNISLIKTIVCAGLYPNIAIAKRVTKNGVISWTPEDGSVRIHPSSVNNRVSHLPSR
YLTYFTKQRSTAIFLHDTTCISVPILLFAGSNISIKLEKGQYIISINHSENVICEQESAE
LIQKLQQGLNSLLEYKVTNPATVSWSTFEGDLLNAIINLVSQTDQELGFDNIRENVNCGE
EFY
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatcaacgtggttttaaaggcatgtttaactcttatgcgcgatataatagagac
gaacaaacacaatctacatctggatacaaaagaacatactcacaagcacgaagacctcct
ggattaaagggaaaagaaattggaatgtattataaaaacaagaataaagggagacagaaa
acaaaggcttcagaagttcttaaattatcattgaatatacagcaaccaattaggattatg
ttagataatgcagagagattttacaatccatttttttgtccaaattctaaatctgataag
gatgacaaggattatcaatttcatgatactcaatttaaaagaaaattttttgaaattgta
catggtgatatacagcaaaatcttgccaaagctatgaatgtaagttcaaagttgcgaaga
aatagtgatatagacagaatattacaaaatgataacagagagaagcataatcaacatgct
tataataatatgttgaagtttcgattaaaattaccagcgtataaaaaaagatcagaaata
ttacaattgattgaagataatcaagttgttgttattagtggagaaactggatgtggcaaa
acgacacaaattgcacaatttatattggatgatgaattagaagctggaaatggcagcgtt
actcgaataatttgcacgcagcctagaaggatttcagccatttctgttgctgaacgtgta
gctatggaaagagcagaaaatcttggaaattctgttggctatcagatacgacttgaaaaa
cagccatcacgagatcatggaagtatattgttttgtactactggtatattactgcaaatt
atgaaacatgatccagcattaaaaggtttctctcatgtgatactggatgaaattcacgaa
cgtaccacagaaagtgatttcgttattacattattaaagcaaattattccaaaaagaata
gacttaaaagttctcttaatgagtgcaacattgaatgctgaaagcttttcgaaatattat
aacgattgtcccatgatacatataccaggttttacttatcctgtacaggagttttattta
gaagatgttttatcagttgtaaatcataaatttcccgaggcgccacctgaacctacaggt
cacaaaaaacatctaaaaaggtataaagagcagcgatgtaagaaagaagaatttttggac
gtattacaaccttatattagacaaattatggctgagaaaaaatatgagaggcatgttatt
gatcaattgcggaatgtaaatagtgaagatctttctttggagctcatagaaaaattagtt
agatatatctgtaatacaaaaggtcctggagctattcttatttttttacctggtatgatg
gatatatcgaaattaaatagaatgatgttagactctaaatgttatccaagtcacaaatac
gtcatctatcctcttcattcacgtatgccgacagtcgatcagaaacttatatttaaagaa
ccacctcatggcgtgcgtaaaataattattgcgacttcaatcgctgaaacatcgataact
atagaagatgttgtgtacgtaatagattgcgggaaaacaaaatttggaaaatttgatgta
aataagaatattcaaactttagagcctgagtgggtatctatagctaatgctaagcaaaga
cgcggtagagctggcagggttaaaagtggtgaatgttatcatatgtatacaagagcacga
gaaatgacatttgatcaatatccattgccagaaatgctaagaacacgcttagaagaggta
attttgcaaataaaagtcttgcaattaggaagagtcaaacagttcctagctaccgtcatg
gatccaccagatttaaaagctattgatctgtctgtcgagttactcgagacacttaatgcc
ctcgatgaaaacgagaatttgactcctttgggttatcatttagcacatttaccacttgat
cctagaactgggaaaatgattttgtggggtgcattgttctcttgtgttgagccaatattt
gctattgctgctagtcttacatttaaagacgctttctattgtccactaggacaagaggaa
aaggctaataaaaaaaagttagaactcagtatggaacaatgtagtgatcatattgctctt
gcggaagctctaagaagatatgaagttgcatttcgaagaggaaatgttcgccagttttgt
cgagaatatttcctctcatttaacacattgaaacttctctccgaaatgaaagctcaattt
gcacagtatttatatgacatgaaatttctggatagtgaaaatccaagccatgtaaactct
aacagaaattcaaataacatatcgttgataaaaactattgtctgtgcaggattatatcct
aacatcgctattgccaagcgagttactaaaaatggggtaattagttggacaccggaagat
ggtagtgtgcgtatacatccatcgagtgtaaacaatagagtttcccacttacctagtcga
tacttgacatatttcacgaaacaacgctccactgctatatttttacatgatactacatgt
ataagtgtaccgattttattattcgccggatcaaatatatcgataaaattagaaaaagga
cagtatataatcagcatcaatcattcggaaaacgtcatttgtgaacaagaatccgcagaa
ttgatacagaaacttcaacaaggtctgaacagtttattggaatataaagttacaaatcca
gcaacagtatcttggtcgacctttgaaggggacttgttaaatgcgattattaacctagtc
tctcaaacagatcaagaattgggttttgataatatacgcgaaaatgtaaattgtggcgaa
gaattctactaa
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