Cyphomyrmex costatus: 108780767
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Entry
108780767 CDS
T11118
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03440
Homologous recombination
ccoa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108780767
03460 Fanconi anemia pathway
108780767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccoa03032
]
108780767
03400 DNA repair and recombination proteins [BR:
ccoa03400
]
108780767
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
108780767
DNA replication proteins [BR:
ccoa03032
]
Eukaryotic type
DNA Topoisomerases
108780767
DNA repair and recombination proteins [BR:
ccoa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
108780767
FA (Fanconi anemia) pathway
108780767
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
HVO_2753_ZBP
Toprim_4
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
108780767
NCBI-ProteinID:
XP_018404081
LinkDB
All DBs
Position
Unknown
AA seq
1093 aa
AA seq
DB search
MAFFKSYTIALNCTIYHNLKNKASILSSNNPGNVFCSLRQYCSKSIMKVLNVAEKPDAAK
NIAGYLSHGTSRRREGFSKYNKIFEFNVQLWGQNCQMVMTSVSGHLLGHEFTGGYNKWHS
CHPLNLFDATVSKQCLEESHINIKKTLEREVRSCNTLIIWTDCDREGENIGFEIIQVCQA
VKPHIHIYRAKFSEITRPSIERALQTLTQPDKAMSDAVDVRSELDLRIGAAFTRFQTLRL
QKVFPNTLGDLLISYGSCQFPTLGFVVERFLAIDRFKSEPYWKLKVMDDHEGISVEFRWA
RVRLFEKVPCQIFLDICLEQPEATVEKVTCKPKSKWRPLPLDTVELEKQGSRKLRINAKE
TMRIAERLYTQGFISYPRTETNIFPKELNLRSLVEQQVNNQEWGNFAENLLESGITPRQG
KKSDQAHPPIHPTKYTDSLHGNEAKIYEFVVRHFLACLSKNAEGRETTIEINIAGEKFMA
NGLEIIATNYLDVYIYEKWNNKQIHFYEQQQVFRPTSIDMVEEKTSAPSLLTEAELIALM
DKHGIGTDATHAEHIDTIKSRQYVGLTDTQHFMPGKLGIGLVMGYDNMGFQMSKPHLRAD
LEKDLQLICQRQKDPNEVLQHQINKYREVFQVAIERANLIDDSLAHYLDERPLQTEGTQL
APMITTIFKCPKCGSDMILKQRRQGRGKYITCLGYPACTNVIWFSEAVEDVEVLNETCNL
CTENIRKLKFKLVRNVIPLYGTSYTTCIGCDTTFNEMLNIKEDCIKQTGRANYTVHNNTR
DILSSASNTSLPTSSTSQSRNTQPISSSTEFVQNNNISLIGTSATSRRPNTQNQNSNISQ
PNSSNRPSTINRNTTSDNRENHFSWINSDFNNPGNRANQSTFRNPHNTNNVKDIWGNTDD
DAEIMCHCHEIAIQLTVRKEGPNKGRLFYKCAKPQGSGCSFFLWGSDSAESNTTNEHSSW
ESSWNRNNDGASTSNNDWGNPSMNNIMCNCNQPARKLTVYKDGPNKGRHFYGCPKGVGST
CNFFKWADENDADDNHTDWSNSTARGTGNRARNKFPQKGSAPKRPRPTGGKRKCGNCGLE
GHTKKKCPNNAMD
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggccttttttaagtcgtataccattgcattgaattgtacgatttatcataatttgaaa
aacaaagccagcatcttgtctagcaacaatcctggtaatgtgttttgttcattaagacaa
tattgttcaaagagcatcatgaaggttctcaatgttgctgaaaaacctgatgctgctaaa
aatattgctggttatttatcgcatggaaccagcagaaggagggaaggtttctccaaatac
aacaaaatctttgaatttaatgtgcaactatggggtcaaaactgtcaaatggtgatgaca
tctgtgtctggccacttattaggtcatgaatttacaggaggctataacaaatggcacagc
tgtcatccattaaatttatttgatgctacagtatctaaacagtgcttagaagagagtcat
ataaatattaagaaaaccttggagcgagaagtacgatcttgtaatacattgattatttgg
acagattgtgacagagaaggagagaacataggttttgagattattcaggtctgccaagca
gtcaagcctcatatacatatatatagagcaaaattctcagaaattacgagaccgtctatt
gaaagagctttgcaaactttgacacagccagataaggcgatgagcgatgctgtagatgta
agaagcgaattagatttacgaattggtgcggcgttcacgagatttcaaaccttaagattg
cagaaagtgtttcccaacactcttggagatctgcttatcagttacggaagttgccagttt
ccaacgcttggatttgtagtcgagaggttccttgccattgatcgctttaagtccgaacca
tactggaaactaaaagtgatggacgatcatgaagggatatctgtagaattcagatgggcc
agggtaagattgttcgaaaaagtgccttgtcagatatttctggacatatgcttggaacag
ccggaagctacagtggagaaagtaacatgcaaaccaaaaagcaaatggagacctctaccg
ctagatactgttgaactggaaaagcaaggctctcgtaagttacgcataaacgcaaaggag
acaatgaggatagcggaaagattgtacacccaaggttttattagttatccacgcacggaa
acaaatatatttccaaaggaattgaatctaagatccttagtagagcaacaagtaaacaat
caggaatggggtaactttgcggaaaatttactggaatctggaataactcccagacaaggg
aaaaagagcgatcaagcgcatcctcctattcatcctacgaagtataccgacagtttgcat
ggaaacgaagctaagatctacgaatttgtggttcgacattttttggcttgtctgtcgaag
aatgcggagggccgagaaacaacaatagaaattaatatagcgggagagaagtttatggct
aacggtcttgaaatcatagcaacgaattatcttgacgtgtacatatatgagaaatggaac
aataaacagattcacttttacgagcagcagcaagttttccgaccaactagtattgatatg
gtggaagagaaaacttcagcaccgagtttattaactgaggctgagctgatcgcactgatg
gacaaacacggtattggtacagacgctacacatgctgagcatattgataccatcaaatcc
aggcaatatgtgggcttaacggatactcaacatttcatgccaggcaaattgggaattggt
ttagttatgggttatgataatatgggcttccaaatgtccaagccacatttgcgtgcggat
ctagaaaaagatttacaactgatatgccagcgtcaaaaagacccgaatgaagtattacaa
catcaaattaataaatatcgcgaagtgttccaagtggctatagaacgcgccaatttgata
gacgattctttagcacactatctcgacgaaagacctctccaaaccgagggaacacaactt
gctccaatgattactactatatttaaatgtccaaaatgcggttctgacatgattttaaaa
cagagacgacaaggcagaggaaaatatatcacctgtttgggatatccagcatgtaccaat
gtaatttggttttcagaagcagtagaggatgtggaagttctaaacgaaacatgcaatctg
tgtacagaaaatatacgcaaattaaaattcaaattagtcaggaatgtgatacctttgtat
ggtacctcttatacaacttgtataggctgtgacactacgtttaacgaaatgttaaacatt
aaagaagattgtattaaacaaactggaagagcgaattatactgttcataataatacaagg
gatatattaagctccgcttcaaatacatctctacctacctcaagtacatctcaatcacga
aatacccagccaatttctagcagtacagaatttgtacaaaataacaatattagcttgatc
ggaacttctgctacatccagaagaccaaacacgcaaaaccagaattctaatatttctcag
ccgaatagctcgaataggccaagtactatcaatagaaatacaacatcggacaatagagaa
aatcatttttcttggattaattctgatttcaacaatccagggaacagagcaaatcaatcc
acgttcagaaatcctcacaatacgaacaatgtaaaagatatatggggtaatacagacgat
gatgctgagattatgtgtcactgtcatgagattgcaatccaattaacagttagaaaagag
ggaccaaataaaggacgtctgttttacaaatgtgctaaaccgcaggggagcggttgcagt
tttttcttgtggggatctgacagcgccgaatctaacacaacgaacgaacattcctcttgg
gaatctagttggaatagaaacaacgatggtgctagcacttctaataacgattggggaaat
ccatctatgaataatattatgtgcaattgtaatcagcccgctcgaaagttaacagtttac
aaagatggccccaataagggacggcatttttatggatgtcccaagggtgtaggttccact
tgtaatttttttaaatgggcagatgagaatgatgctgacgataatcatacggattggagc
aattccactgcaagaggaacaggaaatagagctcgaaacaagtttccacaaaaaggtagt
gctcctaaaagacccagacccaccggaggcaagagaaagtgtggaaattgcggattagaa
ggtcatacgaagaagaaatgtccgaataacgcgatggactga
DBGET
integrated database retrieval system
